Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6876 212 7e-50 seq1021 118 1e-21 seq1396 105 8e-18 >seq6876 Length=59938 Score = 212 bits (234), Expect = 7e-50 Identities = 315/444 (71%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 162550 ACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGA 162609 ||| ||| | |||| |||||| ||| ||| || | || | || ||||| || Sbjct 27811 ACCTCGTACCGCTTCTTCCACCGCGCCTCCTTGGAGGGCGGCGTCTTCTCCGTCTCCAGG 27870 Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGA 162669 ||||| ||| || |||| ||||||| ||||||||||| || |||||||| || || Sbjct 27871 CTGTTCTTCCCCTGCAGGGCCCTCAGCTGGCGCACCATCTCCAGGTTGGTCTTCAGCGGG 27930 Query 162670 AAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCC 162729 ||||| |||||| || || | | || |||| ||||| | |||||| || Sbjct 27931 AAGTCCTGGCCGCACAGGTTGACGAAGTACCTCCAGGGGGCGCTGTGGTTGTACAGGTCG 27990 Query 162730 TGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAAC 162789 | ||||| || |||||||| || || ||||| |||||||| |||||||||| Sbjct 27991 CCCATGCAGTTGAGGTCGGCCTGCACCCGGCTCCAGCTGGCGTACACCACGCTCTCCAGG 28050 Query 162790 CTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG-AA 162848 | |||||| ||||| |||||||| || || | ||| | ||||||| | ||| || Sbjct 28051 CGGCTGGCGATGAAGACGTTGTCGAAGCAGGAGGCGATCTGCTGCACGGCC-GAGAGGAA 28109 Query 162849 CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGC 162908 | | ||| || | || ||||| |||||||| || ||||| || ||||||| ||| Sbjct 28110 GGTGGACGGCGCCTTGCGGTCCACGTGGACGCAGTACAGGTTCTGGGGCGCGTAGACGGC 28169 Query 162909 CCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGG 162968 |||||| | |||||||| ||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 28170 CCTCAGCAGCCTCTCGAAGGTCTGGATCTTGTGGTGGACCACGATGGAGTACGCGATGGG 28229 Query 162969 GAACTCAGCCTCCTCGCGACTGAG 162992 |||| ||||||||||| || || Sbjct 28230 GAACCGGGCCTCCTCGCGGCTCAG 28253 >seq1021 Length=130879 Score = 118 bits (130), Expect = 1e-21 Identities = 237/347 (68%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 ||||| ||||| || || || | ||| ||||||||||||||| || | | || Sbjct 53324 CGCACGATCTCCGCGTTCGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGCAGGTAC 53383 Query 162700 TTCCACTTAAC-GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 ||||| || | || | | | || |||| | ||||| || || || || || || Sbjct 53384 CTCCACCGGACCGGCGACTTCATG-AGGTCCTCCATGCAGTTGAGGTCCGCTTGCACCCG 53442 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| |||||||| | |||||||||| ||| |||| ||||| || ||| | || Sbjct 53443 GGACCAGGACGCGTATATCACGCTCTCCAGCCTGCTGGCCACAAACACGTTGGGCAGGCA 53502 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 || || || ||| ||||| || ||| | || || | || | || ||||| Sbjct 53503 GGAGACGATGCCCTGGACGGCAAGCCTGAAGGCCTCTGGG--GACTTGCGGTCCACGTGC 53560 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | || || || |||| || |||| ||| | |||||||||||||| || Sbjct 53561 ACGCAGTACACGTTGTGGGGCACGTATATAGCCCGCAGGAGCCTCTCGAACATCTCGATT 53620 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || | ||| ||||| || || ||||| ||||||||||| |||||| Sbjct 53621 TTCTCGTGGACCACCATGGAGTACGCGATGGGGAACTCCATCTCCTC 53667 >seq1396 Length=282374 Score = 105 bits (116), Expect = 8e-18 Identities = 232/345 (67%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | | || | |||||| ||||| || || || |||||| | Sbjct 108024 GCCAGCTCTTTCGGGGAGAGGAAATCATCCACGTGGATGAAGGCATCGCCGGGGACGAAG 108083 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| |||| ||||| | || || || || || || || || | || | Sbjct 108084 TTCTCGTAGTTCTGCCTCGACGGCCCAAGGACAATCGGCACTGCGCCCACAGCCAGCGGG 108143 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| || || || ||||| ||||| |||| | ||||||||| || | ||||||||| Sbjct 108144 TTGTACAGCTTCTCCGTAATGTAGTCTTTGTGGATGGAGTTCTCGAAGGACAGATAGAAT 108203 Query 177126 TTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 || ||| | || | |||| ||||| | ||| | || || || | | | | Sbjct 108204 TTGCAGCTGGCTATGATTGGGAAGAAGTTCTGGTCGTTCACGTATTCCCCGAAAGCTTGC 108263 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTG 177244 || || | || || || | || || |||||| |||||| || || | | ||| Sbjct 108264 CCATAGGCGTGAATCTCCACGTACTTGTAGAGCTCGTTGTAGTA-CTTGACACGGATGTG 108322 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||| |||||| |||||||||| |||||| | || ||||||||| Sbjct 108323 CTCGGGGTTCCAGTTGCTGACGATCCAGCAGATTAGCTTGCTCTT 108367 Score = 105 bits (116), Expect = 8e-18 Identities = 232/345 (67%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | | || | |||||| ||||| || || || |||||| | Sbjct 113868 GCCAGCTCTTTCGGGGAGAGGAAATCATCCACGTGGATGAAGGCATCGCCGGGGACGAAG 113927 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| |||| ||||| | || || || || || || || || | || | Sbjct 113928 TTCTCGTAGTTCTGCCTCGACGGCCCAAGGACAATCGGCACTGCGCCCACAGCCAGCGGG 113987 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| || || || ||||| ||||| |||| | ||||||||| || | ||||||||| Sbjct 113988 TTGTACAGCTTCTCCGTAATGTAGTCTTTGTGGATGGAGTTCTCGAAGGACAGATAGAAT 114047 Query 177126 TTACAGGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 || ||| | || | |||| ||||| | ||| | || || || | | | | Sbjct 114048 TTGCAGCTGGCTATGATTGGGAAGAAGTTCTGGTCGTTCACGTATTCCCCGAAAGCTTGC 114107 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTG 177244 || || | || || || | || || |||||| |||||| || || | | ||| Sbjct 114108 CCATAGGCGTGAATCTCCACGTACTTGTAGAGCTCGTTGTAGTA-CTTGACACGGATGTG 114166 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||| |||||| |||||||||| |||||| | || ||||||||| Sbjct 114167 CTCGGGGTTCCAGTTGCTGACGATCCAGCAGATTAGCTTGCTCTT 114211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577859287246400