Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8880 89.7 4e-13 seq1886 89.7 4e-13 seq36092 86.0 5e-12 seq2502 86.0 5e-12 seq40546 82.4 6e-11 seq2188 82.4 6e-11 >seq8880 Length=37550 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | |||||||||| ||||| || || || ||||| || || || ||| Sbjct 1658 CAGGAGGTCCAAGTGACAGAAGCACGGTGTTTCTACGGATTCCAAATCGCGATGGAGAAT 1599 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || || ||||||||||| ||||| || || || ||||||||||| Sbjct 1598 ATCCACTCAGAAATGTACAGCCTTCTCATTGACACCTACATCAAAGA 1552 >seq1886 Length=180247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | |||||||||| ||||| || || || ||||| || || || ||| Sbjct 88255 CAGGAGGTCCAAGTGACAGAAGCACGGTGTTTCTACGGATTCCAAATCGCGATGGAGAAT 88196 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || || ||||||||||| ||||| || || || ||||||||||| Sbjct 88195 ATCCACTCAGAAATGTACAGCCTTCTCATTGACACCTACATCAAAGA 88149 >seq36092 Length=2431 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | |||||||||| ||||| || || || ||||| || || || ||| Sbjct 480 CAGGAGGTCCAAGTGACAGAAGCACGGTGTTTCTACGGATTCCAAATCGCGATGGAGAAT 539 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || || ||||||||||| || || || || || ||||||||||| Sbjct 540 ATCCACTCAGAAATGTACAGCCTACTCATTGACACCTACATCAAAGA 586 >seq2502 Length=134960 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || || | || ||||| || || || |||| || |||| Sbjct 28569 TGATGGCCCTGCCCCCCTGCCACGCCCTGTGCCAGTTCTATGTGTGTGATGGGGAGCTGT 28510 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || | || || |||||||| |||| || || || ||||| || | Sbjct 28509 CCTGCCAGCTGTACCAGCGGTCCGGAGACATGGGGTTAGGTGTGCCCTTCAACATCGCCA 28450 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| ||||||||||| ||||| || ||| Sbjct 28449 GCTATGCCCTGCTCACGTACATGATCGCCCAC 28418 >seq40546 Length=1788 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 77234 GGCTTTGTCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCG 77293 ||||||| ||||||||||| | ||||||||| |||||||| || ||||| || || ||| Sbjct 1687 GGCTTTGACGCTCCCTCTCTCGACAGCCGGTCCGCCTCCTCGTTCCCTTTATAACCGGCG 1746 Query 77294 TGTCCTGGGATGTGCAGC 77311 || || |||||||| ||| Sbjct 1747 TGGCCGGGGATGTGAAGC 1764 >seq2188 Length=160988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 77234 GGCTTTGTCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCG 77293 ||||||| ||||||||||| | ||||||||| |||||||| || ||||| || || ||| Sbjct 37502 GGCTTTGACGCTCCCTCTCTCGACAGCCGGTCCGCCTCCTCGTTCCCTTTATAACCGGCG 37443 Query 77294 TGTCCTGGGATGTGCAGC 77311 || || |||||||| ||| Sbjct 37442 TGGCCGGGGATGTGAAGC 37425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397072312000045