Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq18090 111 2e-19 seq18171 102 9e-17 seq3116 102 9e-17 seq16166 98.7 1e-15 seq36092 87.8 2e-12 seq8880 87.8 2e-12 seq1886 87.8 2e-12 >seq18090 Length=13718 Score = 111 bits (122), Expect = 2e-19 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| |||| |||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 7406 AGCTGTTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAG 7347 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 ||||||| | ||||||||| | ||||||| |||||| Sbjct 7346 CAGTGCGCCCTCATCTCCAAATCCGCCGGGGGCATCGGG 7308 Score = 105 bits (116), Expect = 7e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||||| | ||||||||| | ||||||| ||| ||||| |||||||||||| Sbjct 7309 CCGATGCCCCCGGCGGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCGTAGATGCCC 7368 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| || | |||||| ||||| Sbjct 7369 TCGATGCTGTCGTCCTTCATGGCCAGCAGGAAACAGCT 7406 Score = 102 bits (112), Expect = 9e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 79370 TCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAAC 79429 |||| ||| ||| |||||||||||| |||||||| ||||| |||||||||||| | Sbjct 5854 TCTCCACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCCC 5913 Query 79430 GCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCC 79489 || |||||| | ||| |||| |||||| || || || | |||||| ||||| Sbjct 5914 GCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCC 5973 Query 79490 ACGGCTCCAGATAGATGGCGAACG 79513 | |||||||| || |||||||||| Sbjct 5974 AGGGCTCCAGGTACATGGCGAACG 5997 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 4961 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 5020 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||||||||| ||| ||||||||||||||| |||||| ||||| || Sbjct 5021 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCC 5080 Query 79200 GGTCTC 79205 ||||| Sbjct 5081 CGTCTC 5086 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 19491 CGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCC 19550 |||||||||| ||||| ||||| |||||| ||| || | || ||||| || ||| Sbjct 5997 CGTTCGCCATGTACCTGGAGCCCTGGCACTTTGACATCTTCGAGTTCCTGGAGCTGAAGA 5938 Query 19551 TGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGG 19610 |||| ||| | |||||| ||| ||||||||||||| ||| | ||||| || | Sbjct 5937 AGAACACGGGGAAGGAGGAGCAGCGGGCTCGCGACCTCTTCTACGCCCTCTGGATCCCCG 5878 Query 19611 ACCTATTCATGGAGAAGGTTGAGA 19634 |||| |||||| ||| ||| |||| Sbjct 5877 ACCTCTTCATGAAGAGGGTGGAGA 5854 >seq18171 Length=35654 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| ||||| ||||| || ||||| || || |||||||| || || || ||| Sbjct 27514 GTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCCGCCATCTTCTGGCTGAAGAAACGAGGC 27455 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||||||||||| |||||||||||||| || ||| ||||||| Sbjct 27454 CTCATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCCGAGACGAGG 27406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60339 GTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTT 60398 ||| | ||||| ||||||| ||||||| |||||| |||| |||||||||||||||||| Sbjct 26095 GTGGAGAACCCCTTCGACTTCATGGAGAACATCTCCCTGGAGGGGAAGACCAACTTCTTT 26036 Query 60399 GAGAAGCGGGTCGGGGATTA 60418 |||||||| || ||||| || Sbjct 26035 GAGAAGCGTGTGGGGGAGTA 26016 >seq3116 Length=119845 Score = 102 bits (112), Expect = 9e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 |||||||| ||||| ||||| || ||||| || || |||||||| || || || ||| Sbjct 115517 GTGGAAGGGATCTTTTTCTCCGGTTCGTTTGCCGCCATCTTCTGGCTGAAGAAACGAGGC 115458 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||||||||||||| |||||||||||||| || ||| ||||||| Sbjct 115457 CTCATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCCGAGACGAGG 115409 >seq16166 Length=16622 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 79370 TCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAAC 79429 |||| ||| ||| |||||||||||| |||||||| ||||| |||||| ||||| | Sbjct 910 TCTCCACCCTCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGATCGCGAGCCC 969 Query 79430 GCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCC 79489 || |||||| | ||| |||| |||||| || || || | |||||| ||||| Sbjct 970 GCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAACTCGAAGATGTCAAAGTGCC 1029 Query 79490 ACGGCTCCAGATAGATGGCGAACG 79513 | |||||||| || |||||||||| Sbjct 1030 AGGGCTCCAGGTACATGGCGAACG 1053 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| ||| | ||| | ||| || ||||||| || ||||||||||||| Sbjct 9 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 68 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||||||||| ||| ||||||||||||||| |||||| ||||| || Sbjct 69 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCC 128 Query 79200 GGTCTC 79205 ||||| Sbjct 129 CGTCTC 134 >seq36092 Length=2431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || |||||||||||||||||||| ||||| | | || |||||| Sbjct 1273 TAGCCTTTGC-TGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 1331 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 | || ||| | || || ||||| || || | ||||||||||||||||| Sbjct 1332 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGAT 1381 >seq8880 Length=37550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || |||||||||||||||||||| ||||| | | || |||||| Sbjct 863 TAGCCTTTGC-TGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 805 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 | || ||| | || || ||||| || || | ||||||||||||||||| Sbjct 804 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGAT 755 >seq1886 Length=180247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 59989 TAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 |||| ||||| ||| || |||||||||||||||||||| ||||| | | || |||||| Sbjct 87460 TAGCCTTTGC-TGCAGTTGAAGGAATCTTCTTCTCTGGGTCGTTTGCTTCCATCTTCTGG 87402 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 | || ||| | || || ||||| || || | ||||||||||||||||| Sbjct 87401 TTGAAGAAGAGGGGTCTGATGCCTGGTCTCACGTTCTCCAACGAGCTGAT 87352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547981698738960