Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq14962 152 4e-32 seq2502 152 4e-32 seq38573 91.5 1e-13 seq15079 91.5 1e-13 seq1434 91.5 1e-13 >seq14962 Length=18771 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| |||| ||| || |||||||||||||| || | |||||||||||||| ||||| Sbjct 9015 AGCCCAGTGATGTGGGCGATCATGTACGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 8956 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | ||||||||| || |||| |||||| ||||| || || ||||| || || | | Sbjct 8955 ACACCCAACCCCATGTCTCCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATCACAC 8896 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || || ||||| |||| ||||||||| || || || ||||| ||| || |||| Sbjct 8895 ACATAGAACTGGCACAGGGCGTGGCAGGGGGGCAGGGCCATCAGGGGCAGGTCT 8842 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| || || || || || ||||||||||| ||||| || || |||| || Sbjct 7924 CATGTCTTTGTATTCAGCACCAAAGTGTCTCCACTGGAAACCGTAAACAGGGCCCAAATC 7865 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || ||||||| || || |||||||||||||| || | ||| || || || || Sbjct 7864 CCCTTCCTCCCTGTTAGTAAATCCACTCTTGTCCAAAAAATCACGGGATCCATTTGCATC 7805 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| || || || || ||||| || ||||||||||| ||||| ||||| Sbjct 7804 CCAAATTTTCACACCTTTCTCCGACAGCTCTTTGGAATTTGTTGACCC 7757 >seq2502 Length=134960 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| |||| ||| || |||||||||||||| || | |||||||||||||| ||||| Sbjct 28407 AGCCCAGTGATGTGGGCGATCATGTACGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 28466 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || | ||||||||| || |||| |||||| ||||| || || ||||| || || | | Sbjct 28467 ACACCTAACCCCATGTCTCCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATCACAC 28526 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 || || ||||| |||| ||||||||| || || || ||||| ||| || |||| Sbjct 28527 ACATAGAACTGGCACAGGGCGTGGCAGGGGGGCAGGGCCATCAGGGGCAGGTCT 28580 >seq38573 Length=2010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| |||||||| || | || ||||||| | |||| ||||| ||| ||| || || || Sbjct 599 CTCTCTGCTGAGAACAATATTGATCCTGTTTTTCAGGGGTCTGTTCCGTTCTGGAATTGA 540 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| | |||||| ||||| ||||||||||| ||| Sbjct 539 GAACCACGTCTTCCGACCCATAATCACGACGTTCTGCTTACCT 497 >seq15079 Length=27813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| |||||||| || | || ||||||| | |||| ||||| ||| ||| || || || Sbjct 3811 CTCTCTGCTGAGAACAATATTGATCCTGTTTTTCAGGGGTCTGTTCCGTTCTGGAATTGA 3752 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| | |||||| ||||| ||||||||||| ||| Sbjct 3751 GAACCACGTCTTCCGACCCATAATCACGACGTTCTGCTTACCT 3709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| |||||||| || | || ||||||| | |||| ||||| ||| ||| || || || Sbjct 10245 CTCTCTGCTGAGAACAATATTGATCCTGTTTTTCAGGGGTCTGTTCCGTTCTGGAATTGA 10186 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| | |||||| ||||| ||||||||||| ||| Sbjct 10185 GAACCACGTCTTCCGACCCATAATCACGACGTTCTGCTTACCT 10143 >seq1434 Length=271241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||| |||||||| || | || ||||||| | |||| ||||| ||| ||| || || || Sbjct 16093 CTCTCTGCTGAGAACAATATTGATCCTGTTTTTCAGGGGTCTGTTCCGTTCTGGAATTGA 16152 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 |||||| ||||| | |||||| ||||| ||||||||||| ||| Sbjct 16153 GAACCACGTCTTCCGACCCATAATCACGACGTTCTGCTTACCT 16195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405918164319228