Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2502 165 7e-36 seq14962 159 3e-34 >seq2502 Length=134960 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||||||||||||| || || || || |||||||| ||||| ||||||||| Sbjct 28419 TGGGCGATCATGTACGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCTAACCCC 28478 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || || || |||||||||||||||||||||| || ||||| ||| Sbjct 28479 ATGTCTCCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATCACACACATAGAACTGG 28538 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| ||||| || |||||||| || || || Sbjct 28539 CACAGGGCGTGGCAGGGGGGCAGGGCCATCAGGGGCAGGTC 28579 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || || |||||||| || ||||| |||||| |||| ||||| ||||| || || Sbjct 28579 GACCTGCCCCTGATGGCCCTGCCCCCCTGCCACGCCCTGTGCCAGTTCTATGTGTGTGAT 28520 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || || || ||||||||||||||||| ||||| ||| Sbjct 28519 GGGGAGCTGTCCTGCCAGCTGTACCAGCGGTCCGGAGACATGGGGTTAGGTGTGCCCTTC 28460 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||||||||||||||| || Sbjct 28459 AACATCGCCAGCTATGCCCTGCTCACGTACATGATCGCCCA 28419 >seq14962 Length=18771 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || || |||||||| || ||||| |||||| |||| ||||| ||||| || || Sbjct 8843 GACCTGCCCCTGATGGCCCTGCCCCCCTGCCACGCCCTGTGCCAGTTCTATGTGTGTGAT 8902 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || || || |||||||||||||| || ||||| ||| Sbjct 8903 GGGGAGCTGTCCTGCCAGCTGTACCAGCGGTCCGGAGACATGGGGTTGGGTGTGCCCTTC 8962 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||||||||||||||| || Sbjct 8963 AACATCGCCAGCTATGCCCTGCTCACGTACATGATCGCCCA 9003 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||||||||||||| || || || || |||||||| ||||| || |||||| Sbjct 9003 TGGGCGATCATGTACGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAACCCC 8944 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || || || || |||||||||||||||||||||| || ||||| ||| Sbjct 8943 ATGTCTCCGGACCGCTGGTACAGCTGGCAGGACAGCTCCCCATCACACACATAGAACTGG 8884 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| ||||| || |||||||| || || || Sbjct 8883 CACAGGGCGTGGCAGGGGGGCAGGGCCATCAGGGGCAGGTC 8843 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| | || || |||| ||||| ||| || ||||| || ||||| || | || Sbjct 7756 GGGGTCAACAAATTCCAAAGAGCTGTCGGAGAAAGGTGTGAAAATTTGGGATGCAAATGG 7815 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 || || || ||| |||||||| | || || | ||||||| || || |||||||| Sbjct 7816 ATCCCGTGATTTTTTGGACAAGAGTGGATTTACTAACAGGGAGGAAGGGGATTTGGGCCC 7875 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||| |||||||||||||||||||| || || || Sbjct 7876 TGTTTACGGTTTCCAGTGGAGACACTTTGGTGCTGAATA 7914 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||||||||||||| ||||| || |||||||| || || |||||| Sbjct 7914 TATTCAGCACCAAAGTGTCTCCACTGGAAACCGTAAACAGGGCCCAAATCCCCTTCCTCC 7855 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | || || | |||||||| ||| || || || || | || ||||| || ||| Sbjct 7854 CTGTTAGTAAATCCACTCTTGTCCAAAAAATCACGGGATCCATTTGCATCCCAAATTTTC 7795 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 || || ||| ||||| |||| || || | |||| Sbjct 7794 ACACCTTTCTCCGACAGCTCTTTGGAATTTGTTGACCCC 7756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447818569794480