Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1461 161 1e-34 seq10270 138 2e-27 seq1802 98.7 1e-15 >seq1461 Length=415275 Score = 161 bits (178), Expect = 1e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||||||| |||| || || | ||||| |||||||| ||| |||||||| ||||||| Sbjct 58740 TTGACGATCTCGAATCCAACCTTCCCGCCAAAGGTGCTTGGCATCCAGTACTCCGGGGAA 58681 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| |||| || ||||| |||||| | || || |||| || | ||| || Sbjct 58680 CAGATGGGGTTACCCATCAGCCCTTTCAGGGAGTAAGGGGCTCCCATTTCCACCATGGTC 58621 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || |||| || ||||| | |||||| |||||||||| |||| |||||||||||| Sbjct 58620 TCTCCAAAGACAGCATTGGGCCTGGGCTTCTCCACCAAGAGCCCGGGGTACAGCTCCACT 58561 Query 8531 GCCTCGACGTCTCCGTA 8547 || || | ||||||||| Sbjct 58560 GCGTCAATGTCTCCGTA 58544 Score = 114 bits (126), Expect = 2e-20 Identities = 167/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || |||||||| || || |||||||| ||| || || || Sbjct 57262 TCACCAATGAGGATGAGGCGGGTGGTCTGAAAGAGGCGCTCGTCATCCCAGTCGGGGTGC 57203 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||| | ||||| || | |||||| || | |||||||| |||||||||||| Sbjct 57202 TCGCTCTTCAAGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 57143 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATG-TTTTCGGG 9410 ||||| || || |||||||| || ||||| || || || || || | || | || || Sbjct 57142 ATGAGGCCCGGGACCAGGCCGAAGGCCTCGTGCCCCACGGCAAG-CTTGTGCTCCTCAGG 57084 Query 9411 CACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCG-AGGGGGG 9461 || | ||| || ||| ||| | |||||| || | || |||| ||||||| Sbjct 57083 GACATGGGGTGGGTAGTGCATCTCCACCTGCACTTGCTTCACCGTAGGGGGG 57032 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||| ||||| ||||| |||| ||||||||||| || | || || | | ||| Sbjct 56272 CTTACGCCATGACCCAGGGCTTTGGTGAAGGCCGGTCCCTTCTTCATGTCGGATTTGAAA 56213 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || ||||| ||||| |||| ||||||||||| | ||| | || || ||||| Sbjct 56212 AACTGATGGGTGAAGTGTTGAGCAAAGAAGGCAAACATCATATTGCTTCCTTGAGGATCA 56153 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 ||| ||||| | ||| | || ||| ||||||| Sbjct 56152 GGAATGAAGCGCTTCCTCAACAGCAGTTTCTCCACAA 56116 >seq10270 Length=31464 Score = 138 bits (152), Expect = 2e-27 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||| || ||| || || || |||||||| Sbjct 10137 ATGAGGCGTGTGGTCTGGAAGAGGCGCTCATCGTCCCAGGTGGGGTGCTCCTGTTTCAGC 10196 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || |||| |||||| || | |||||||| ||||| ||||||||||| || || Sbjct 10197 ACGTCACAGACCCGGTTGTGCTCACGAAGCCAGATGGTGGCATACATCATGAGTCCTGGG 10256 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 | ||| ||||| || || || || || || | || | ||||| || | ||||||| Sbjct 10257 ATCAGCCCAAATGCTTCATGGCCCACGGCAAAGCGGTGCTCCTCGGGGACATGGGGAGGA 10316 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 ||| ||||| ||||||||| || || || | || ||||||| ||| || || | || | Sbjct 10317 TAGTGCATGTCCACCTGGACCTCCTTCACTGTAGGAGGATACACTTCCCCATCCACCACC 10376 Query 9484 T 9484 | Sbjct 10377 T 10377 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || |||||||| |||||||||||| |||||||||| ||| ||| ||||||| ||| Sbjct 8870 CCACCAAAGGTGCTAGGCTTCCAGTACTCCGGGGAGCAAATGGGGTTTCCCATGAGTCCT 8929 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 || | || | || || |||| || | ||| |||| || || ||||| ||||| | | Sbjct 8930 TTCAAAGAATATGGGGCTCCCATTTCCACCATGGTCTCTCCAAAAATGGCATTGGGCCTG 8989 Query 8495 GGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCC 8554 ||||| |||||||| | | | |||| ||||| || || | |||||| || || | Sbjct 8990 GGCTTCTCCACCAATAGGGCAGGATACAACTCCATTGCATCAATGTCTCCATACAGCTCT 9049 Query 8555 CTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 |||||| | || ||||| | ||||||| Sbjct 9050 TCGAGTTCTGTTGCCATCTCTGTCTCTCCTG 9080 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 9926 GGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTAATAGGAGAGATTGGAG 9985 || ||||| ||||| | ||| || || ||||| | | || |||||||||||| || || Sbjct 11450 GGTGTTGGGCAATCTTCAGGTACAGGCGGTAGGGTTCGTGTGTAATAGGAGAGGTTTGAA 11509 Query 9986 AAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGGAGGGCTGTCAATCAAA 10045 | |||||||||||| ||| | || || | ||||| | ||||||||||| |||||| Sbjct 11510 TACGCTTCCCAGCTTTTGTAACCATAATCTGAATTGTAGGTAGGAGGGCTGTCGATCAAA 11569 Query 10046 T 10046 | Sbjct 11570 T 11570 >seq1802 Length=192620 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 |||||||||| | || || || ||||||||||||||||| || | ||||||| | | Sbjct 45920 CGAACCCCACCTGCCCACCAAACGTGCTGGGCTTCCAGTAGTGTGGTGCGCAGATGGCAT 45979 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | ||||||| ||||| || ||||| ||||| |||| ||| | ||||||| ||| || | Sbjct 45980 TTCCCATGAGTCCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATGCTCTGACCAAATA 46039 Query 8481 TGGC 8484 |||| Sbjct 46040 TGGC 46043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716167011319360