Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anguilla_20rostrata_20[genbank_20GCA_5F001606085.1_202016-04-04] 79,209 sequences; 1,413,032,609 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7938 149 2e-30 seq11089 93.3 1e-13 seq3404 87.8 4e-12 >seq7938 Length=58116 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| || || |||||||| |||||||| || ||| Sbjct 30624 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 30681 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 30682 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 30741 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 30742 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 30801 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| | || || ||||||| Sbjct 30802 TCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGACTCAG 30841 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| || || |||||||| |||||||| || ||| Sbjct 30852 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 30909 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 30910 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 30969 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 30970 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 31029 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| | || || ||||||| Sbjct 31030 TCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGACTCAG 31069 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| || || |||||||| |||||||| || ||| Sbjct 31080 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 31137 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 31138 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 31197 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 31198 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 31257 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| | || || ||||||| Sbjct 31258 TCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGACTCAG 31297 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || |||||||| || || |||||||| |||||||| || ||| Sbjct 32824 CAGATCTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 32881 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 32882 ACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCAGC 32941 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 32942 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 33001 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || ||||| | || || ||||||| Sbjct 33002 TCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGACTCAG 33041 Score = 136 bits (150), Expect = 1e-26 Identities = 169/229 (74%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || || || || || || || || || |||||||| |||||||| Sbjct 30390 AAAATGC---AGATCTTTGTCAAGACACTGACTGGCAAGACCATCACCCTGGAGGTGGA- 30445 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| |||||||| || ||||| ||||||||||| || || || | Sbjct 30446 -GCCCAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCC 30504 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| ||||| || ||||| |||||||| | || || ||| Sbjct 30505 CAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCG 30564 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | || ||| |||| || || || || ||||| | || || ||||||| Sbjct 30565 ACTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGCGACTCAG 30613 >seq11089 Length=28475 Score = 93.3 bits (102), Expect = 1e-13 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | ||||||||||| |||||||||||||||||| | ||| Sbjct 18150 CAGATCTTCGTGAAAACCTTGACAGGAAAAACCATCACCCTCGAGGTGGAACCCAGTGAC 18209 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG-AATC 178028 ||||||||||| || || ||||| ||||| || ||||| |||| Sbjct 18210 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGTAATC 18255 >seq3404 Length=165914 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| | ||||| ||||| |||||||||||||||||| | ||| Sbjct 55292 CAGATATTTGTGAAAACGTTGACAGGGAAAACCATCACCCTCGAGGTGGAACCCAGCGAC 55351 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||||||||| || || ||||||||| || || ||||| Sbjct 55352 ACCATCGAGAATGTGAAGGCAAAGATTCAAGATAAGGAAGG 55392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202509574959546