Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq162191 141 1e-28 seq166640 111 2e-19 seq166639 111 2e-19 seq82221 111 2e-19 seq79735 111 2e-19 seq51709 111 2e-19 seq195903 87.8 2e-12 >seq162191 Length=1649 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || | | Sbjct 1376 ATGCAGATCTTTGTCAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCTAGT 1435 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || ||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1436 GATAGCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1494 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || |||||||||||||| |||| ||||||||| |||||||| Sbjct 1495 GCAGCGTCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAA 1554 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 1555 CATCCAGAAGGAGTCCACCCTCCACCTGGT 1584 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || || || |||||||| | || || || || Sbjct 1145 AAAATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACTTTGGAGGTGGAGCCC 1204 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||||||| | ||| Sbjct 1205 AGCGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1264 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| || || || || || || |||| ||||||||| |||||| Sbjct 1265 CAGCAGCGTCTGATCTTTGCTGGAAAGCAACTCGAGGACGGCCGCACCCTCTCTGACTAC 1324 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||||| |||| || || || || Sbjct 1325 AACATCCAGAAGGAGTCCACCCTCCACCTGGT 1356 >seq166640 Length=792 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 300 AGGTGGATCTGTCCAAAGACGTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 358 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 359 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 418 Query 116804 GTCGAGC 116810 || |||| Sbjct 419 GT-GAGC 424 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 100 GAGCCTCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 159 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 160 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGGT 212 >seq166639 Length=720 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 171 AGGTGGATCTGTCCAAAGACGTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 113 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 112 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 53 Query 116804 GTCGAGC 116810 || |||| Sbjct 52 GT-GAGC 47 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 371 GAGCCTCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 312 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 311 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGGT 259 >seq82221 Length=650 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 480 AGGTGGATCTGTCCAAAGACGTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 538 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 539 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 598 Query 116804 GTCGAGC 116810 || |||| Sbjct 599 GT-GAGC 604 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 280 GAGCCTCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 339 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 340 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGGT 392 >seq79735 Length=1152 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 982 AGGTGGATCTGTCCAAAGACGTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 1040 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1041 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1100 Query 116804 GTCGAGC 116810 || |||| Sbjct 1101 GT-GAGC 1106 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 782 GAGCCTCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 841 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 842 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGGT 894 >seq51709 Length=860 Score = 111 bits (122), Expect = 2e-19 Identities = 103/127 (81%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||| ||| | ||| |||||||| |||| ||| ||||| | Sbjct 561 AGGTGGATCTGTCCAAAGACGTGCAGC-ACTGGGAGTCTCTGAAGGACGACGAGAGGTTC 503 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 502 TTCATCTCTCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 443 Query 116804 GTCGAGC 116810 || |||| Sbjct 442 GT-GAGC 437 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| |||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 761 GAGCCTCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 702 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| ||||||||| Sbjct 701 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGGT 649 >seq195903 Length=4854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || ||||| || |||||| ||||||| || ||| ||||| Sbjct 1481 GGGGAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCT 1540 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || | |||||||||||| | || | ||||| ||||| || | | ||||||||| Sbjct 1541 GCTATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTG 1600 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 1601 ATTAGCAGGGATGAGG 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513876371318560