Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq206233 113 4e-20 seq155386 113 4e-20 seq58798 113 4e-20 seq162191 111 1e-19 >seq206233 Length=6715 Score = 113 bits (124), Expect = 4e-20 Identities = 483/747 (65%), Gaps = 26/747 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | || ||||| |||| ||| || | | | || | Sbjct 4232 CTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGA 4291 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | || |||| || ||||||||||| || ||||| || || | || | Sbjct 4292 TGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGG 4351 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| |||| || || || || Sbjct 4352 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 4411 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || | ||||| | | | || || Sbjct 4412 GCAGCTTCCAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT 4459 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | ||||| || ||||| ||| Sbjct 4460 ---ACTGCAGGATGCCCTTGCTGACAGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCT 4516 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAA 133565 ||||||||||||||| ||||||| ||||| |||| ||||| || ||| |||| Sbjct 4517 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 4576 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 | ||| | | | ||| || ||| ||| || | | | | || | || | || |||| Sbjct 4577 T-GTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 4633 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 |||||||||| |||| |||| || || || | || || || | |||||| | Sbjct 4634 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 4693 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 | | | ||||||| ||| | || ||||||||||| | || |||||| | ||| | Sbjct 4694 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 4753 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | || | ||||||| |||| || ||| | |||| || |||||| Sbjct 4754 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCT--GC-TCGGGGGTGACGTACATGTTGA 4810 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCG-TCGCAATACTGGACGATC 133862 || || ||| ||||| || || || ||||| | | ||| || | ||||| Sbjct 4811 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 4869 Query 133863 TCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTG 133922 || | ||||||||||||| | |||||| ||||| || | || ||||| | ||| Sbjct 4870 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 4929 Query 133923 CAATGATCCTTGTATAGCATGTACGGC 133949 || || ||||| |||||||||||| Sbjct 4930 CAGGCGTCTTTGTACAGCATGTACGGC 4956 >seq155386 Length=3452 Score = 113 bits (124), Expect = 4e-20 Identities = 483/747 (65%), Gaps = 26/747 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | || ||||| |||| ||| || | | | || | Sbjct 812 CTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGA 871 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | || |||| || ||||||||||| || ||||| || || | || | Sbjct 872 TGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGG 931 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| |||| || || || || Sbjct 932 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 991 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || | ||||| | | | || || Sbjct 992 GCAGCTTCCAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT 1039 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | ||||| || ||||| ||| Sbjct 1040 ---ACTGCAGGATGCCCTTGCTGACAGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCT 1096 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAA 133565 ||||||||||||||| ||||||| ||||| |||| ||||| || ||| |||| Sbjct 1097 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 1156 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 | ||| | | | ||| || ||| ||| || | | | | || | || | || |||| Sbjct 1157 T-GTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 1213 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 |||||||||| |||| |||| || || || | || || || | |||||| | Sbjct 1214 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 1273 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 | | | ||||||| ||| | || ||||||||||| | || |||||| | ||| | Sbjct 1274 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 1333 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | || | ||||||| |||| || ||| | |||| || |||||| Sbjct 1334 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCT--GC-TCGGGGGTGACGTACATGTTGA 1390 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCG-TCGCAATACTGGACGATC 133862 || || ||| ||||| || || || ||||| | | ||| || | ||||| Sbjct 1391 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 1449 Query 133863 TCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTG 133922 || | ||||||||||||| | |||||| ||||| || | || ||||| | ||| Sbjct 1450 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 1509 Query 133923 CAATGATCCTTGTATAGCATGTACGGC 133949 || || ||||| |||||||||||| Sbjct 1510 CAGGCGTCTTTGTACAGCATGTACGGC 1536 >seq58798 Length=3922 Score = 113 bits (124), Expect = 4e-20 Identities = 483/747 (65%), Gaps = 26/747 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | || ||||| |||| ||| || | | | || | Sbjct 1439 CTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGA 1498 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | || |||| || ||||||||||| || ||||| || || | || | Sbjct 1499 TGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGG 1558 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| |||| || || || || Sbjct 1559 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 1618 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || | ||||| | | | || || Sbjct 1619 GCAGCTTCCAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT 1666 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | ||||| || ||||| ||| Sbjct 1667 ---ACTGCAGGATGCCCTTGCTGACAGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCT 1723 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAA 133565 ||||||||||||||| ||||||| ||||| |||| ||||| || ||| |||| Sbjct 1724 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 1783 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 | ||| | | | ||| || ||| ||| || | | | | || | || | || |||| Sbjct 1784 T-GTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 1840 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 |||||||||| |||| |||| || || || | || || || | |||||| | Sbjct 1841 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 1900 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 | | | ||||||| ||| | || ||||||||||| | || |||||| | ||| | Sbjct 1901 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 1960 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | || | ||||||| |||| || ||| | |||| || |||||| Sbjct 1961 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCT--GC-TCGGGGGTGACGTACATGTTGA 2017 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCG-TCGCAATACTGGACGATC 133862 || || ||| ||||| || || || ||||| | | ||| || | ||||| Sbjct 2018 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 2076 Query 133863 TCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTG 133922 || | ||||||||||||| | |||||| ||||| || | || ||||| | ||| Sbjct 2077 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 2136 Query 133923 CAATGATCCTTGTATAGCATGTACGGC 133949 || || ||||| |||||||||||| Sbjct 2137 CAGGCGTCTTTGTACAGCATGTACGGC 2163 >seq162191 Length=1649 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 1356 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCG 1297 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| ||||||||||| ||||| || |||||||||||||| Sbjct 1296 AGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1237 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || ||| || ||| ||||| | || | || || Sbjct 1236 ATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTC 1177 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| |||||||| Sbjct 1176 CCGGTCAGGGTCTTCACAAAGATCTGCAT 1148 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || | ||||| || || Sbjct 1584 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 1525 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 1524 AGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1465 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | | | || | ||| ||||| | ||| | || || Sbjct 1464 ATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTA 1405 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||| || || ||||| ||||||||| || Sbjct 1404 CCGGTCAGGGTCTTGACAAAGATCTGCATGCCT 1372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432727964558152