Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq162191 118 1e-21 seq119325 100 3e-16 seq100462 100 3e-16 seq74504 95.1 1e-14 seq40526 95.1 1e-14 seq144604 93.3 5e-14 seq88705 89.7 6e-13 >seq162191 Length=1649 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || || ||||| ||||| || Sbjct 1339 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAA 1280 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 1279 GATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 1220 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | |||||| | ||||| || | |||||||| || || || || ||||| || Sbjct 1219 CTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAGGGTCTTCAC 1160 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||| |||||||| || Sbjct 1159 AAAGATCTGCATTTTGAC 1142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| || || || |||| || ||||| || ||||| || Sbjct 1567 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAA 1508 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 1507 GATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1448 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | ||||| || | |||||||| || || || || ||||| || Sbjct 1447 CTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGAC 1388 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 1387 AAAGATCTGCAT 1376 >seq119325 Length=712 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||||| |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 507 AAAATTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 448 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 447 GTCCACTATACTAACGAGGA 428 >seq100462 Length=2944 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 2253 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 2312 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 2313 CTATACTAACGAGGA 2327 >seq74504 Length=563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||| || |||| || | ||||||||||||| ||||| |||||||||||||||| | Sbjct 386 ATAAAAAGGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 327 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 |||| ||||||||||| ||||||| Sbjct 326 TACTGTCCACTATACTAACGAGGAT 302 >seq40526 Length=712 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 206 AAAAGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 265 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 266 GTCCACTATACTAACGAGGA 285 >seq144604 Length=5048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 653 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 712 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 713 TATACTAACGAGGA 726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 4606 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 4665 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 4666 TATACTAACGAGGA 4679 >seq88705 Length=1535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 1458 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 1517 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1518 TACTAACGAGGA 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570327257493680