Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq135289 237 1e-57 seq71836 237 1e-57 seq62555 237 1e-57 >seq135289 Length=1586 Score = 237 bits (262), Expect = 1e-57 Identities = 590/878 (67%), Gaps = 26/878 (3%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 ||||||||||||||||| |||||| |||| |||||||| || | ||||| || || || Sbjct 606 TTCCCCATTGCCTACTCCATGGTGATCCACGAGAAGATAGAGATGTTTGAGCGACTTCTA 665 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG-AAGTCCCCAGA 107830 ||||| || ||| | ||||||||||| |||||||| || ||||| | ||| ||| | | Sbjct 666 CGAGCTGTTTATACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAAGCCCCTAAA 725 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 || |||| | |||| || || |||||||||||||| || || || || | ||||| Sbjct 726 GA-TTTCCACAAGGCTGTGGCGGTAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAG 784 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 || || | ||||| || ||||| |||||| ||||||| || || ||||||| || Sbjct 785 TAGATTAGAAAGTGTGGTATACGCCTCATGGTCCCGAGTGCAGGCAGATTTGAACTGCAT 844 Query 107951 GGAAGACTTGCTCCAGAGCT--CAGTGCCA-TGGAAGTACTTACTGAATACATGCGGGAC 108007 | |||| |||| ||||| ||| ||| |||| |||| | || || || || ||| | Sbjct 845 GAAAGATCTGCT---GAGCTCGCAGGTCCAGTGGAGGTACCTGCTCAACACCTGTGGGTC 901 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAA 108067 |||||||||||| || ||||||| || ||| | | || || ||| | | || | Sbjct 902 AGACTTCCCCATCAAAACCAATGTTGAAATGATTCGGGTACTGAAGGCCCTCAGAGGGAG 961 Query 108068 GAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTA 108127 |||||| ||||||||||||| | ||| | ||| ||| || ||| || | || Sbjct 962 GAACAGCATGGAGTCTGAGGCCACCAATGACTACAAGAAAGGCCGTTGGCTGTATCATTA 1021 Query 108128 TGAGGTGACAGACACACTGTACCCTACCAGCAAGA--TGAAGGACCCTCCCC--CTGAT- 108182 | || || | ||||| | | || ||| ||||| | ||||| | || Sbjct 1022 CAATGTAAC--TAATACTGT---CATCAAGACAGATGTGAAGAAAAGTCCCCCACCCATC 1076 Query 108183 AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACAT 108242 | |||||||||||||| ||||| || ||||||| | | |||| ||||| |||| Sbjct 1077 AGCAGCCCCATGTTCACAGGAAATGCTTACTTTGTGGTCACCAGAGCTTTTGTGAGACAT 1136 Query 108243 GTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCC 108302 || | | || | || || |||| |||| | ||||| | ||||| Sbjct 1137 GTGATGCAGGACAGAGAGGTTCAGCAGCTCATTGACTGGGAGAGGGACACATTCAGCCCT 1196 Query 108303 GACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTA 108360 ||||| ||| | |||||||| || ||||| ||| | || | ||||| || | || Sbjct 1197 GACGAGCACTTGTGGGCCACTCTACAGCGAATGCCCTCTG--TTCCTGGATCAATGCCCG 1254 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGT 108420 | || ||||||| | | ||||||||| ||| |||| | | || |||||| | Sbjct 1255 CCAACATCAAGTATGATGTGTCAGACATGCAAGCCCTCGCTCGTGTGGTGAAGTGGAGCT 1314 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 | | | ||||| || || | || || || || | |||| ||| | | || Sbjct 1315 ATCTAGCAGGAGACGTGAGAAATGGAGCTCCGTACTATCACTGC-ATGGGCGCTTACAGA 1373 Query 108481 GGGCCA-TCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA-ACCATCACCT 108538 | || |||| | ||||| |||| ||||| ||| | || ||| | ||||| || Sbjct 1374 AGAACAGTCTGTGTGTACGGAACCGGTGACCTCCCGTGGCTCCT-GAGACAACATCAGCT 1432 Query 108539 CTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACG 108576 || ||||| |||||||| || ||| ||||||| || Sbjct 1433 GTTTGCAAATAAGTTTGATCCTGAGGTTGATGATATCG 1470 >seq71836 Length=1774 Score = 237 bits (262), Expect = 1e-57 Identities = 590/878 (67%), Gaps = 26/878 (3%) Strand=Plus/Plus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 ||||||||||||||||| |||||| |||| |||||||| || | ||||| || || || Sbjct 794 TTCCCCATTGCCTACTCCATGGTGATCCACGAGAAGATAGAGATGTTTGAGCGACTTCTA 853 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTG-AAGTCCCCAGA 107830 ||||| || ||| | ||||||||||| |||||||| || ||||| | ||| ||| | | Sbjct 854 CGAGCTGTTTATACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAAGCCCCTAAA 913 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 || |||| | |||| || || |||||||||||||| || || || || | ||||| Sbjct 914 GA-TTTCCACAAGGCTGTGGCGGTAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAG 972 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 || || | ||||| || ||||| |||||| ||||||| || || ||||||| || Sbjct 973 TAGATTAGAAAGTGTGGTATACGCCTCATGGTCCCGAGTGCAGGCAGATTTGAACTGCAT 1032 Query 107951 GGAAGACTTGCTCCAGAGCT--CAGTGCCA-TGGAAGTACTTACTGAATACATGCGGGAC 108007 | |||| |||| ||||| ||| ||| |||| |||| | || || || || ||| | Sbjct 1033 GAAAGATCTGCT---GAGCTCGCAGGTCCAGTGGAGGTACCTGCTCAACACCTGTGGGTC 1089 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAA 108067 |||||||||||| || ||||||| || ||| | | || || ||| | | || | Sbjct 1090 AGACTTCCCCATCAAAACCAATGTTGAAATGATTCGGGTACTGAAGGCCCTCAGAGGGAG 1149 Query 108068 GAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTA 108127 |||||| ||||||||||||| | ||| | ||| ||| || ||| || | || Sbjct 1150 GAACAGCATGGAGTCTGAGGCCACCAATGACTACAAGAAAGGCCGTTGGCTGTATCATTA 1209 Query 108128 TGAGGTGACAGACACACTGTACCCTACCAGCAAGA--TGAAGGACCCTCCCC--CTGAT- 108182 | || || | ||||| | | || ||| ||||| | ||||| | || Sbjct 1210 CAATGTAAC--TAATACTGT---CATCAAGACAGATGTGAAGAAAAGTCCCCCACCCATC 1264 Query 108183 AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACAT 108242 | |||||||||||||| ||||| || ||||||| | | |||| ||||| |||| Sbjct 1265 AGCAGCCCCATGTTCACAGGAAATGCTTACTTTGTGGTCACCAGAGCTTTTGTGAGACAT 1324 Query 108243 GTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCC 108302 || | | || | || || |||| |||| | ||||| | ||||| Sbjct 1325 GTGATGCAGGACAGAGAGGTTCAGCAGCTCATTGACTGGGAGAGGGACACATTCAGCCCT 1384 Query 108303 GACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTA 108360 ||||| ||| | |||||||| || ||||| ||| | || | ||||| || | || Sbjct 1385 GACGAGCACTTGTGGGCCACTCTACAGCGAATGCCCTCTG--TTCCTGGATCAATGCCCG 1442 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGT 108420 | || ||||||| | | ||||||||| ||| |||| | | || |||||| | Sbjct 1443 CCAACATCAAGTATGATGTGTCAGACATGCAAGCCCTCGCTCGTGTGGTGAAGTGGAGCT 1502 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 | | | ||||| || || | || || || || | |||| ||| | | || Sbjct 1503 ATCTAGCAGGAGACGTGAGAAATGGAGCTCCGTACTATCACTGC-ATGGGCGCTTACAGA 1561 Query 108481 GGGCCA-TCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA-ACCATCACCT 108538 | || |||| | ||||| |||| ||||| ||| | || ||| | ||||| || Sbjct 1562 AGAACAGTCTGTGTGTACGGAACCGGTGACCTCCCGTGGCTCCT-GAGACAACATCAGCT 1620 Query 108539 CTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACG 108576 || ||||| |||||||| || ||| ||||||| || Sbjct 1621 GTTTGCAAATAAGTTTGATCCTGAGGTTGATGATATCG 1658 >seq62555 Length=2559 Score = 237 bits (262), Expect = 1e-57 Identities = 590/878 (67%), Gaps = 26/878 (3%) Strand=Plus/Minus Query 107712 TTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTG 107771 ||||||||||||||||| |||||| |||| |||||||| || | ||||| || || || Sbjct 2401 TTCCCCATTGCCTACTCCATGGTGATCCACGAGAAGATAGAGATGTTTGAGCGACTTCTA 2342 Query 107772 CGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC-AGA 107830 ||||| || ||| | ||||||||||| |||||||| || ||||| ||| |||| | | Sbjct 2341 CGAGCTGTTTATACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAAGCCCCTAAA 2282 Query 107831 GACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAG 107890 || || || | |||| || || |||||||||||||| || || || || | ||||| Sbjct 2281 GATTTCCACA-AGGCTGTGGCGGTAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAG 2223 Query 107891 TAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTAT 107950 || || | ||||| || ||||| |||||| ||||||| || || ||||||| || Sbjct 2222 TAGATTAGAAAGTGTGGTATACGCCTCATGGTCCCGAGTGCAGGCAGATTTGAACTGCAT 2163 Query 107951 GGAAGACTTGCTCCAGAGCT--CAGTGCCA-TGGAAGTACTTACTGAATACATGCGGGAC 108007 | |||| |||| ||||| ||| ||| |||| |||| | || || || || ||| | Sbjct 2162 GAAAGATCTGCT---GAGCTCGCAGGTCCAGTGGAGGTACCTGCTCAACACCTGTGGGTC 2106 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAA 108067 |||||||||||| || ||||||| || ||| | | || || ||| | | || | Sbjct 2105 AGACTTCCCCATCAAAACCAATGTTGAAATGATTCGGGTACTGAAGGCCCTCAGAGGGAG 2046 Query 108068 GAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTA 108127 |||||| ||||||||||||| | ||| | ||| ||| || ||| || | || Sbjct 2045 GAACAGCATGGAGTCTGAGGCCACCAATGACTACAAGAAAGGCCGTTGGCTGTATCATTA 1986 Query 108128 TGAGGTGACAGACACACTGTACCCTACCAGCAAGA--TGAAGGACCCTCCCC--CTGAT- 108182 | || || | ||||| | | || ||| ||||| | ||||| | || Sbjct 1985 CAATGTAAC--TAATACTGT---CATCAAGACAGATGTGAAGAAAAGTCCCCCACCCATC 1931 Query 108183 AATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACAT 108242 | |||||||||||||| ||||| || ||||||| | | |||| ||||| |||| Sbjct 1930 AGCAGCCCCATGTTCACAGGAAATGCTTACTTTGTGGTCACCAGAGCTTTTGTGAGACAT 1871 Query 108243 GTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCC 108302 || | | || | || || |||| |||| | ||||| | ||||| Sbjct 1870 GTGATGCAGGACAGAGAGGTTCAGCAGCTCATTGACTGGGAGAGGGACACATTCAGCCCT 1811 Query 108303 GACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTA 108360 ||||| ||| | |||||||| || ||||| ||| | || | ||||| || | || Sbjct 1810 GACGAGCACTTGTGGGCCACTCTACAGCGAATGCCCTCTG--TTCCTGGATCAATGCCCG 1753 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGT 108420 | || ||||||| | | ||||||||| ||| |||| | | || |||||| | Sbjct 1752 CCAACATCAAGTATGATGTGTCAGACATGCAAGCCCTCGCTCGTGTGGTGAAGTGGAGCT 1693 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 | | | ||||| || || | || || || || | |||| ||| | | || Sbjct 1692 ATCTAGCAGGAGACGTGAGAAATGGAGCTCCGTACTATCACTGC-ATGGGCGCTTACAGA 1634 Query 108481 GGGCCA-TCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGA-ACCATCACCT 108538 | || |||| | ||||| |||| ||||| ||| | || ||| | ||||| || Sbjct 1633 AGAACAGTCTGTGTGTACGGAACCGGTGACCTCCCGTGGCTCCT-GAGACAACATCAGCT 1575 Query 108539 CTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACG 108576 || ||||| |||||||| || ||| ||||||| || Sbjct 1574 GTTTGCAAATAAGTTTGATCCTGAGGTTGATGATATCG 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347383790861844