Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq184131 159 2e-34 seq60973 159 2e-34 seq60972 159 2e-34 >seq184131 Length=3048 Score = 159 bits (176), Expect = 2e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || |||||| ||| |||||||| ||||||| ||| |||||| ||||| | | ||| Sbjct 2643 CACTTCCCTACCTTCTCCTGCAAGGAGGACTGCAAGGTCATCACAGACACAG-CGTCCAA 2585 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || | |||||||||||| ||| |||| || |||||||| ||||| ||||| Sbjct 2584 GCTCGAGCGCAGCGCCTTCTACTGGGGCCCTCTGGGAGTGGAGGAGGCCCATCGCATGCT 2525 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | || |||||||| ||||| || || ||| |||| ||||||||||| || Sbjct 2524 GCGGGACGCCCCGCTTGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTCTT 2465 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| | | ||| || ||||| ||| | || || |||||| Sbjct 2464 CACGCTGTCCTACCACGCCAAGGGCGGGCCGGTCAGCGTGCGCATCGACTACAAG 2410 >seq60973 Length=3587 Score = 159 bits (176), Expect = 2e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || |||||| ||| |||||||| ||||||| ||| |||||| ||||| | | ||| Sbjct 3182 CACTTCCCTACCTTCTCCTGCAAGGAGGACTGCAAGGTCATCACAGACACAG-CGTCCAA 3124 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || | |||||||||||| ||| |||| || |||||||| ||||| ||||| Sbjct 3123 GCTCGAGCGCAGCGCCTTCTACTGGGGCCCTCTGGGAGTGGAGGAGGCCCATCGCATGCT 3064 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | || |||||||| ||||| || || ||| |||| ||||||||||| || Sbjct 3063 GCGGGACGCCCCGCTTGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTCTT 3004 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| | | ||| || ||||| ||| | || || |||||| Sbjct 3003 CACGCTGTCCTACCACGCCAAGGGCGGGCCGGTCAGCGTGCGCATCGACTACAAG 2949 >seq60972 Length=3587 Score = 159 bits (176), Expect = 2e-34 Identities = 178/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 91799 CATTTCCCTGTCTTTTCCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA 91858 || |||||| ||| |||||||| ||||||| ||| |||||| ||||| | | ||| Sbjct 3182 CACTTCCCTACCTTCTCCTGCAAGGAGGACTGCAAGGTCATCACAGACACAG-CGTCCAA 3124 Query 91859 -CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCT 91917 || || | || | |||||||||||| ||| |||| || |||||||| ||||| ||||| Sbjct 3123 GCTCGAGCGCAGCGCCTTCTACTGGGGCCCTCTGGGAGTGGAGGAGGCCCATCGCATGCT 3064 Query 91918 GCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTT 91977 ||| || | | || |||||||| ||||| || || ||| |||| ||||||||||| || Sbjct 3063 GCGGGACGCCCCGCTTGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTCTT 3004 Query 91978 CACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAG 92032 ||||||||| || ||| | | ||| || ||||| ||| | || || |||||| Sbjct 3003 CACGCTGTCCTACCACGCCAAGGGCGGGCCGGTCAGCGTGCGCATCGACTACAAG 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355328350975918