Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq162191 91.5 1e-13 >seq162191 Length=1649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || || Sbjct 1375 GCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1316 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| ||||| || || |||||| |||||||||| ||||| ||||| || Sbjct 1315 GAGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGG 1256 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | | |||| |||||||||| Sbjct 1255 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCAC 1196 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| ||||||| || || || || || ||||| Sbjct 1195 CTCCAAAGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 1148 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || ||||| || || Sbjct 1603 GCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1544 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| |||||||| |||||| |||||||||| ||||| || || || Sbjct 1543 GAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 1484 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714 ||||| || ||||| ||| || || | |||| || || | || | |||||| Sbjct 1483 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--GTTCTCAATGCTATCACTAGGCTCC 1426 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| ||||||| || || || || || ||||| Sbjct 1425 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCAT 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494771095995200