Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq93232 86.0 3e-12 seq76231 86.0 3e-12 seq46718 86.0 3e-12 seq179514 82.4 4e-11 seq162182 82.4 4e-11 seq157600 82.4 4e-11 seq134960 82.4 4e-11 >seq93232 Length=723 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 211 AAAAAAACGTAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 270 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 271 GCTCTAACCAACTGAGCTAACCGGCC 296 >seq76231 Length=1524 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || ||||| | |||||||||| ||||||| ||||||||||||| Sbjct 882 AAAAAAAAATTCAAGTGGCCAGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 823 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 822 CACGCTCTAACCAACTGAGCTAACCGGCC 794 >seq46718 Length=1398 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || ||||| | |||||||||| ||||||| ||||||||||||| Sbjct 517 AAAAAAAAATTCAAGTGGCCAGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 576 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 577 CACGCTCTAACCAACTGAGCTAACCGGCC 605 >seq179514 Length=11197 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 193 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 252 Query 11528 CC 11529 || Sbjct 253 CC 254 >seq162182 Length=6008 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4507 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4448 Query 11528 CC 11529 || Sbjct 4447 CC 4446 >seq157600 Length=5026 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1992 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1933 Query 11528 CC 11529 || Sbjct 1932 CC 1931 >seq134960 Length=5026 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3035 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3094 Query 11528 CC 11529 || Sbjct 3095 CC 3096 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260826707224456