Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq34164 154 2e-32 seq120726 131 2e-25 >seq34164 Length=4105 Score = 154 bits (170), Expect = 2e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||| ||| | || |||||| || ||||| ||||| || |||||||| |||||||| Sbjct 3920 TTGATGATGTCGAAGCCCACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCCGGGGAG 3861 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| |||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 3860 CAGATGGCGTTTCCCATTAAGCCCTTGAGGGAGTAAGGTGCCCCCATCTCCACCATGGTC 3801 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||| ||||| | | |||||| |||||||| | || | ||| | ||||||| Sbjct 3800 TCGCCAAAGATTGCGTTAGACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACA 3741 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || | || |||||| | || ||| | ||||| ||||| || ||||||| Sbjct 3740 GCGTCCACGTGTCCGTAGAACTCCTCGAGCACTGCAGCCATTTCTTTCTCTCCTG 3686 Score = 129 bits (142), Expect = 8e-25 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || ||||||| ||| || || || | |||| Sbjct 1902 ATGAGCCGGGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCCGGGTGGACCTCCTTCAAC 1843 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 ||||| ||||||| ||||||||| | |||||||| || ||||||||||| ||||| || Sbjct 1842 ACATCACACACTCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGG 1783 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | ||||| || | ||||| Sbjct 1782 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGACTCGGGAACATGAGGAGGG 1723 Query 9802 TAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAA 9859 ||| ||||| || || || || || || | ||||||||||| || || || || | Sbjct 1722 TAGTGCATGTCAGCGCCC--ACTTCCTTTACTGTTGGGGGATACATCTCTCCATCCATGA 1665 Query 9860 TCTG 9863 |||| Sbjct 1664 TCTG 1661 >seq120726 Length=4106 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| || ||| ||||| || ||||||||||| |||||||| | |||||| Sbjct 1879 TTGACGATATTGAAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAG 1938 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| |||||||||||||| || ||||| |||| ||| | || ||| Sbjct 1939 CAGATGGGGTTTCCCATCAGGCCTTTGAGGGAGAAGGGAGCACCCATCTCCACCATACTC 1998 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 ||||| || | || ||||| | || |||| || || |||| ||| | ||||| | Sbjct 1999 TCACCAAATAGACTGTCAGGACGCGTTTTCTCCAGCAGGACACCGGGGTAGAGCTCCAGA 2058 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || || ||||| || ||||| Sbjct 2059 GCATCTATGTCACCATAAAG 2078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706678154100640