Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq206233 93.3 1e-13 seq155386 93.3 1e-13 seq58798 93.3 1e-13 >seq206233 Length=6715 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC---ATGCGAACTC 365023 |||||| |||||||||| | || |||||||| |||||||| ||| | | || | Sbjct 3982 TTCCAGTTGATCTGAAGCGGCTGTATAAAACCGTTTGGGAAATCTCCCAGAAGACAATAC 3923 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 ||| | ||||||||||| ||||| || || ||| |||||||||||| | ||| | Sbjct 3922 TCA---AGATGGCGGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGTCGCTGAACATCC 3866 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 ||| | |||| | || || ||||| || |||||| |||||||| |||||| Sbjct 3865 ACATCGCAGAGCCGAACTACGGAAAGCTAACCAGCATGCACTTCTACGGCTGGAAA 3810 >seq155386 Length=3452 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC---ATGCGAACTC 365023 |||||| |||||||||| | || |||||||| |||||||| ||| | | || | Sbjct 562 TTCCAGTTGATCTGAAGCGGCTGTATAAAACCGTTTGGGAAATCTCCCAGAAGACAATAC 503 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 ||| | ||||||||||| ||||| || || ||| |||||||||||| | ||| | Sbjct 502 TCA---AGATGGCGGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGTCGCTGAACATCC 446 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 ||| | |||| | || || ||||| || |||||| |||||||| |||||| Sbjct 445 ACATCGCAGAGCCGAACTACGGAAAGCTAACCAGCATGCACTTCTACGGCTGGAAA 390 >seq58798 Length=3922 Score = 93.3 bits (102), Expect = 1e-13 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC---ATGCGAACTC 365023 |||||| |||||||||| | || |||||||| |||||||| ||| | | || | Sbjct 1189 TTCCAGTTGATCTGAAGCGGCTGTATAAAACCGTTTGGGAAATCTCCCAGAAGACAATAC 1130 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 ||| | ||||||||||| ||||| || || ||| |||||||||||| | ||| | Sbjct 1129 TCA---AGATGGCGGCCGACCGCGGCGCCTTCATCGACCAGAGCCAGTCGCTGAACATCC 1073 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 ||| | |||| | || || ||||| || |||||| |||||||| |||||| Sbjct 1072 ACATCGCAGAGCCGAACTACGGAAAGCTAACCAGCATGCACTTCTACGGCTGGAAA 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299871712851692