Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq103745 122 6e-23 seq153745 118 7e-22 seq125345 118 7e-22 seq109829 84.2 1e-11 >seq103745 Length=6952 Score = 122 bits (134), Expect = 6e-23 Identities = 83/91 (91%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA-GATAGGGGGTAATCTCGTTAAT 25960 |||||||||| |||||||||||||||||||||||||| || || ||| ||||||||| || Sbjct 448 AAGCCCGTTCTCTTGGCTGTGGTTTCGCTAGATAGTAGGACAGTGGG-AATCTCGTTCAT 506 Query 25961 CCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||||||| |||||||||||||||||||| Sbjct 507 CCATTCATGCACGTCACTAATTAGATGACGA 537 >seq153745 Length=6471 Score = 118 bits (130), Expect = 7e-22 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| ||||||| || | ||| || || ||||| || |||||||| ||||||||| || Sbjct 2504 CCACAGACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATGGCA 2563 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 ||||||| || | |||||| || ||||| ||| | | |||| |||||||| | |||| Sbjct 2564 AAAACGACCGTTACATCGTCAATGGATCCCATGAGGCGAACAAGTTGCAGGACATGCTTG 2623 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || || ||||||||||||| || || || ||||| || || || || Sbjct 2624 ATGGGTTCATCAAAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 2681 >seq125345 Length=5240 Score = 118 bits (130), Expect = 7e-22 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| ||||||| || | ||| || || ||||| || |||||||| ||||||||| || Sbjct 18 CCACAGACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATGGCA 77 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 ||||||| || | |||||| || ||||| ||| | | |||| |||||||| | |||| Sbjct 78 AAAACGACCGTTACATCGTCAATGGATCCCATGAGGCGAACAAGTTGCAGGACATGCTTG 137 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || || ||||||||||||| || || || ||||| || || || || Sbjct 138 ATGGGTTCATCAAAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 195 >seq109829 Length=4044 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 5/71 (7%) Strand=Plus/Minus Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980 |||||||||||||| ||||| || ||||||||| |||| |||||| |||||||||| Sbjct 1837 TCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCGTCACTAA 1778 Query 25981 TTAGATGACGA 25991 ||||||||||| Sbjct 1777 TTAGATGACGA 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334096043270486