Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq162191 149 1e-30 seq166640 89.7 9e-13 seq166639 89.7 9e-13 seq82221 89.7 9e-13 seq79735 89.7 9e-13 seq51709 89.7 9e-13 >seq162191 Length=1649 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || |||||||| || |||||||| || || ||| Sbjct 1602 CCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1543 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||| || || || || || || | || ||||| || || Sbjct 1542 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 1483 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||| ||| | || | || || Sbjct 1482 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACC 1423 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || ||||||||||| || |||||||| Sbjct 1422 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCAT 1376 >seq166640 Length=792 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 212 ACCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 153 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 152 TACTGGATGGGGAA 139 >seq166639 Length=720 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 259 ACCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 318 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 319 TACTGGATGGGGAA 332 >seq82221 Length=650 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 392 ACCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 333 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 332 TACTGGATGGGGAA 319 >seq79735 Length=1152 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 894 ACCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 835 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 834 TACTGGATGGGGAA 821 >seq51709 Length=860 Score = 89.7 bits (98), Expect = 9e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 |||||||| |||||||||||| ||| ||||||||||||||||||| | |||||| || Sbjct 649 ACCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 708 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 709 TACTGGATGGGGAA 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919220352498320