Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq162191 118 1e-21 seq119325 91.5 2e-13 seq100462 91.5 2e-13 seq74504 86.0 7e-12 seq40526 86.0 7e-12 seq144604 84.2 2e-11 >seq162191 Length=1649 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| || || || |||| || || ||||| ||||| || Sbjct 1339 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAA 1280 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 1279 GATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 1220 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | | |||||| | ||||| || | |||||||| || || || || ||||| || Sbjct 1219 CTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAGGGTCTTCAC 1160 Query 42197 AAAGATTTGCATTTTCAC 42214 |||||| |||||||| || Sbjct 1159 AAAGATCTGCATTTTGAC 1142 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| || || || |||| || ||||| || ||||| || Sbjct 1567 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAA 1508 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 1507 GATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1448 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | | || || | ||||| || | |||||||| || || || || ||||| || Sbjct 1447 CTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGAC 1388 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 1387 AAAGATCTGCAT 1376 >seq119325 Length=712 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 507 AAAATTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 448 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 447 GTCCACTATACTAACGAGGA 428 >seq100462 Length=2944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 2253 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 2312 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 2313 CTATACTAACGAGGA 2327 >seq74504 Length=563 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||| || |||| || | | |||||||||| ||||| |||||||||||||||| | Sbjct 386 ATAAAAAGGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 327 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 |||| ||||||||||| ||||||| Sbjct 326 TACTGTCCACTATACTAACGAGGAT 302 >seq40526 Length=712 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 206 AAAAGTTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 265 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 266 GTCCACTATACTAACGAGGA 285 >seq144604 Length=5048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 653 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 712 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 713 TATACTAACGAGGA 726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 4606 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 4665 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 4666 TATACTAACGAGGA 4679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541797010899040