Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq206233 132 5e-26 seq155386 132 5e-26 seq58798 132 5e-26 seq162191 96.9 3e-15 seq172677 91.5 1e-13 seq133256 91.5 1e-13 >seq206233 Length=6715 Score = 132 bits (146), Expect = 5e-26 Identities = 490/746 (66%), Gaps = 30/746 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||| ||||| |||| ||| || | | Sbjct 4228 AGGTCTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTG 4287 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | ||||||| ||||||||||| || || ||||| || || | Sbjct 4288 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 4347 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 ||||| ||||| |||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 4348 GCGGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTC 4406 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || | | |||| | | || ||||| | | | ||||||| Sbjct 4407 CTTCAGCAGCTT----CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCCCACATGTCGTA 4460 Query 146280 ATGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGAT 146336 |||| |||| || || |||| | ||| ||||| || || || ||| | | Sbjct 4461 CTGCAGGATGCCCTTGCTGA-CAGGAGAGCCTTC--GTACGTCTCGTAGGGGCCGA-GCT 4516 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | |||||| |||||||| || ||||| || | |||| |||||||| |||| || Sbjct 4517 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC-TGA 4575 Query 146396 A-GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGT 146452 | ||| | || ||| || || ||| || | ||| || || | || | ||||||| Sbjct 4576 ATGTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 4633 Query 146453 CGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGC 146512 |||| | ||| |||| |||| || | || | ||| |||||| ||| | || Sbjct 4634 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 4693 Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | | ||||||| ||| | || ||||||||||| | || |||| | ||| | Sbjct 4694 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 4753 Query 146573 TCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 ||| | || | ||||||| || | | | ||||| || |||||| Sbjct 4754 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCTGC---TCGGGGGTGACGTACATGTTGA 4810 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTG-TCGCAATACTGCACAATC 146691 ||||| ||||||| || || || || |||||| | | ||| || | || || Sbjct 4811 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 4869 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | ||||||||||||| |||||||| ||||| || | ||||| || | ||||| Sbjct 4870 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 4929 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| ||| ||||| ||||||||||| Sbjct 4930 CAGGCGTCTTTGTACAGCATGTACGG 4955 >seq155386 Length=3452 Score = 132 bits (146), Expect = 5e-26 Identities = 490/746 (66%), Gaps = 30/746 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||| ||||| |||| ||| || | | Sbjct 808 AGGTCTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTG 867 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | ||||||| ||||||||||| || || ||||| || || | Sbjct 868 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 927 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 ||||| ||||| |||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 928 GCGGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTC 986 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || | | |||| | | || ||||| | | | ||||||| Sbjct 987 CTTCAGCAGCTT----CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCCCACATGTCGTA 1040 Query 146280 ATGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGAT 146336 |||| |||| || || |||| | ||| ||||| || || || ||| | | Sbjct 1041 CTGCAGGATGCCCTTGCTGA-CAGGAGAGCCTTC--GTACGTCTCGTAGGGGCCGA-GCT 1096 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | |||||| |||||||| || ||||| || | |||| |||||||| |||| || Sbjct 1097 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC-TGA 1155 Query 146396 A-GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGT 146452 | ||| | || ||| || || ||| || | ||| || || | || | ||||||| Sbjct 1156 ATGTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 1213 Query 146453 CGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGC 146512 |||| | ||| |||| |||| || | || | ||| |||||| ||| | || Sbjct 1214 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 1273 Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | | ||||||| ||| | || ||||||||||| | || |||| | ||| | Sbjct 1274 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 1333 Query 146573 TCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 ||| | || | ||||||| || | | | ||||| || |||||| Sbjct 1334 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCTGC---TCGGGGGTGACGTACATGTTGA 1390 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTG-TCGCAATACTGCACAATC 146691 ||||| ||||||| || || || || |||||| | | ||| || | || || Sbjct 1391 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 1449 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | ||||||||||||| |||||||| ||||| || | ||||| || | ||||| Sbjct 1450 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 1509 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| ||| ||||| ||||||||||| Sbjct 1510 CAGGCGTCTTTGTACAGCATGTACGG 1535 >seq58798 Length=3922 Score = 132 bits (146), Expect = 5e-26 Identities = 490/746 (66%), Gaps = 30/746 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||| ||||| |||| ||| || | | Sbjct 1435 AGGTCTTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCGGAGAGCACCCTGCGGGTG 1494 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | ||||||| ||||||||||| || || ||||| || || | Sbjct 1495 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 1554 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 ||||| ||||| |||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 1555 GCGGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTC 1613 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || | | |||| | | || ||||| | | | ||||||| Sbjct 1614 CTTCAGCAGCTT----CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCCCACATGTCGTA 1667 Query 146280 ATGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGAT 146336 |||| |||| || || |||| | ||| ||||| || || || ||| | | Sbjct 1668 CTGCAGGATGCCCTTGCTGA-CAGGAGAGCCTTC--GTACGTCTCGTAGGGGCCGA-GCT 1723 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | |||||| |||||||| || ||||| || | |||| |||||||| |||| || Sbjct 1724 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC-TGA 1782 Query 146396 A-GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGT 146452 | ||| | || ||| || || ||| || | ||| || || | || | ||||||| Sbjct 1783 ATGTTCA-GCAGCTGAGCTTCGGGGCTTTCAAACGGG-TAACGCATGAGGATGAAGGCGT 1840 Query 146453 CGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGC 146512 |||| | ||| |||| |||| || | || | ||| |||||| ||| | || Sbjct 1841 CGGCCAAACCTTGTACACCGATTCCTATCGGCCTGTGACGCTTGTTTGACTTCTCCGCTT 1900 Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | | ||||||| ||| | || ||||||||||| | || |||| | ||| | Sbjct 1901 CAGGCACGGGATAGAAGTTTATTTCAATGATCTTGTTCAAGTTCTTGACGATGACTTTGG 1960 Query 146573 TCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 ||| | || | ||||||| || | | | ||||| || |||||| Sbjct 1961 TCACGGCCTCTAGTTTTTTAAAGTCAAAAGTCTGC---TCGGGGGTGACGTACATGTTGA 2017 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTG-TCGCAATACTGCACAATC 146691 ||||| ||||||| || || || || |||||| | | ||| || | || || Sbjct 2018 GCGCGATGGAGGCCAGATTGCAGACCGCTACCTCGTCGTGGCTCGTG-TATTCAACGATT 2076 Query 146692 TCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTG 146751 || | ||||||||||||| |||||||| ||||| || | ||||| || | ||||| Sbjct 2077 TCTGTGCAGAGGTTGCTGGACTTGATGCAGCCCAGGTTCTGGTGGTTGCTCTTCCTGTTG 2136 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGG 146777 |||| ||| ||||| ||||||||||| Sbjct 2137 CAGGCGTCTTTGTACAGCATGTACGG 2162 >seq162191 Length=1649 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || |||||||| ||| Sbjct 1572 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCCAGCTGTTTGCCA 1513 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 1512 GCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1453 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | | | || || ||| || || | ||| | || || |||||||| || Sbjct 1452 ACGTTCTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTC 1393 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||| ||||||||| || Sbjct 1392 TTGACAAAGATCTGCATGCCT 1372 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || || || |||||| Sbjct 1344 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGTTGCTTTCCA 1285 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 1284 GCAAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1225 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || ||| | ||| || || | || | || || |||||||| || Sbjct 1224 ACATTCTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTCTTCCCGGTCAGGGTC 1165 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1164 TTCACAAAGATCTGCAT 1148 >seq172677 Length=14965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| |||||||| | ||| || |||||| | || ||| |||||| ||| | ||||| Sbjct 3038 TACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTG 2979 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| ||| |||||||| Sbjct 2978 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTC 2929 >seq133256 Length=12775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| |||||||| | ||| || |||||| | || ||| |||||| ||| | ||||| Sbjct 9826 TACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTG 9767 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| ||| |||||||| Sbjct 9766 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACCGGTTTC 9717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474261490377440