Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq120726 116 5e-21 seq34164 109 8e-19 seq190607 93.3 6e-14 seq181700 93.3 6e-14 >seq120726 Length=4106 Score = 116 bits (128), Expect = 5e-21 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 |||||| ||||| | ||||| || || || ||||||||||| ||||||||| | || Sbjct 1875 GGTTTTGACGATATTGAAACCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGG 1934 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| ||| |||| || ||||| | ||| || ||||| |||| ||| | || Sbjct 1935 GGAGCAGATGGGGTTTCCCATCAGGCCTTTGAGGGAGAAGGGAGCACCCATCTCCACCAT 1994 Query 9058 GCTCTCACCGAAGA---TGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 |||||||| || | || || ||||||| ||| || | | || || | |||||| Sbjct 1995 ACTCTCACCAAATAGACTGTCA---GGACGCGTTTTCTCCAGCAGGACACCGGGGTAGAG 2051 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAA--CTCGG 9155 || | ||| || | ||| ||||| || | ||||| ||||| Sbjct 2052 CTCCAGAGCATCTATGTCACCATAAAGCTCCTCCAAGCCTCGG 2094 >seq34164 Length=4105 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | |||||| || || ||| || ||||| ||||| || ||||||||| || Sbjct 3926 GCGGTGTTGATGATGTCGAAGCCCACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCC 3867 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| |||| |||| | || || | ||| | || ||||||| ||| | Sbjct 3866 GGGGAGCAGATGGCGTTTCCCATTAAGCCCTTGAGGGAGTAAGGTGCCCCCATCTCCACC 3807 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || ||||| || | | || || || || | | || | |||||| Sbjct 3806 ATGGTCTCGCCAAAGATTGCGTTAGACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGC 3747 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || |||| || |||| | || | | | ||||| || || ||||| ||| Sbjct 3746 TCCACAGCGTCCACGTGTCCGTAGAACTCCTCGAGCACTGCAGCCATTTCTTTCTCTCCT 3687 Score = 105 bits (116), Expect = 1e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||||| |||||| |||| | ||| |||||||| | || || || |||||| Sbjct 2719 TCAGGCATCAGAGGGTGCCAGTGGTACAAGGTGTTGAACTCAGATGCAATGCGATTCTGG 2660 Query 9613 TACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| ||| || ||| |||||||| ||| |||||||| | |||| ||||| || | Sbjct 2659 TACTGGAAGCGCTGGT--TGAACAGTAGCTCGGGGTCAAACTTGAGCTTGAAGTTATAGC 2602 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||| || ||||| ||||| | ||| | ||| || ||||| || || Sbjct 2601 CGCTCAGGTGCTGCACATAGTCCTCGATCACAATCTTGATGGTCTCTCC 2553 Score = 96.9 bits (106), Expect = 5e-15 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | | |||||| |||| |||||||| | | || | Sbjct 1902 ATGAGCCGGGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCCGGGTGGACCTCCTTCAAC 1843 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || || | ||||||||||| ||||| ||||||||||||||||| | ||| || Sbjct 1842 ACATCACACACTCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGG 1783 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||| | || | ||||| || ||||| || ||||| || | || | Sbjct 1782 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGACTCGGGAACATGAGGAGGG 1723 Query 9907 TACAGCATAT--GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAA 9964 || |||| | || || || |||| || || ||||||||||| || || || || | Sbjct 1722 TAGTGCATGTCAGCGCCCACTTC-CTTT-ACTGTTGGGGGATACATCTCTCCATCCATGA 1665 Query 9965 CCTG 9968 ||| Sbjct 1664 TCTG 1661 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||| || || | ||| || ||||| || | || || || || || | ||| Sbjct 830 TCACCTTCTACTCCCATAGGGGTTGGGCAATCCTCTGACACAGGGGGGAGGGTGCGTGTA 771 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||| ||||||||||||| ||||| ||||||||| ||| || | Sbjct 770 TAGTAGGAGAGGTTGGAATATGCTTCCCAGCTTTTGTAACCATAATCTGCATTGAAGGTC 711 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 710 GGCGGACTATCAATCA 695 >seq190607 Length=12216 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||| ||||| || || || | || || ||||||||||| |||||||| | || || Sbjct 5414 TTCACTATGTCAAAGCCGACTTGGCCCCCAAAGGTGCTGGGCTTCCAGTAAACTGGAGAA 5473 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || | | ||| || ||||| | ||| || || || |||| ||| | |||||| Sbjct 5474 CAAATAGGGCTTCCCAGTAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTC 5533 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||| | || |||| | | | || | || | ||||| || | ||| | | Sbjct 5534 TCTCCAAAAATGCCCCCCTGACGTGTTCTCTCCAACATCATGCCAGGATAAAATTCAAGA 5593 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| || |||| |||| | |||| |||||||||| Sbjct 5594 GCGTCAATGTCACCGTAGAATTCTTCGAGCTCGCGTGCTATCTCCT 5639 >seq181700 Length=10149 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||| ||||| || || || | || || ||||||||||| |||||||| | || || Sbjct 5414 TTCACTATGTCAAAGCCGACTTGGCCCCCAAAGGTGCTGGGCTTCCAGTAAACTGGAGAA 5473 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || | | ||| || ||||| | ||| || || || |||| ||| | |||||| Sbjct 5474 CAAATAGGGCTTCCCAGTAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTC 5533 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||| | || |||| | | | || | || | ||||| || | ||| | | Sbjct 5534 TCTCCAAAAATGCCCCCCTGACGTGTTCTCTCCAACATCATGCCAGGATAAAATTCAAGA 5593 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| || |||| |||| | |||| |||||||||| Sbjct 5594 GCGTCAATGTCACCGTAGAATTCTTCGAGCTCGCGTGCTATCTCCT 5639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721841729620400