Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq162191 116 9e-21 seq175001 87.8 4e-12 >seq162191 Length=1649 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||||| | || | || || Sbjct 1359 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 1300 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| || ||||| |||||||||||||| || || || || ||| Sbjct 1299 TCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1240 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | || ||| | | || || ||||| ||||| ||| Sbjct 1239 TGGATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTC 1180 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||||||| || || |||||| Sbjct 1179 TTCCCGGTCAGGGTCTTCACAAAGATCTG---CATTTT 1145 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||||| | || | || ||| Sbjct 1587 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCT 1528 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| |||||||||||||| || || || || ||| Sbjct 1527 TCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1468 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | | | || | | || || |||| ||||| ||| Sbjct 1467 TGGATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTC 1408 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| || || Sbjct 1407 TTACCGGTCAGGGTCTTGACAAAGATCTG 1379 >seq175001 Length=17688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| || || | ||||||||| ||||| || || |||||| Sbjct 8520 CCTTTCTGGATGTTGTAGTCAGACAGTGTGCGTCCATCTTCAAGCTGTTTGCCAGCGAAG 8461 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || ||| ||||||| Sbjct 8460 ATCAGACGCTGCTGATCAGGAGGAATTCCT 8431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175772130839902