Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq162191 118 1e-21 seq166640 107 2e-18 seq166639 107 2e-18 seq82221 107 2e-18 seq79735 107 2e-18 seq51709 107 2e-18 >seq162191 Length=1649 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || || ||| | | Sbjct 1376 ATGCAGATCTTTGTCAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCTAGT 1435 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || ||| | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1436 GATAGCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1494 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || |||||||||||||| |||| ||||||||| |||||||| Sbjct 1495 GCAGCGTCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCTGACTACAA 1554 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||| || ||| Sbjct 1555 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGT 1591 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || || || |||||||| | || || ||| || Sbjct 1145 AAAATGCAGATCTTTGTGAAGACCCTGACCGGGAAGACCATCACTTTGGAGGTGGAGCCC 1204 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| || ||| ||||| Sbjct 1205 AGCGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1264 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || || || || || || |||| ||||||||| |||||| Sbjct 1265 CAGCAGCGTCTGATCTTTGCTGGAAAGCAACTCGAGGACGGCCGCACCCTCTCTGACTAC 1324 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| | || || || |||| || ||| Sbjct 1325 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGT 1363 >seq166640 Length=792 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 424 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 366 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | ||||| ||| |||| |||||||| || ||| |||||||| | Sbjct 365 AGATGAAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCACGTCTTTGGACAGAT 306 Query 133394 CCACCT 133399 |||||| Sbjct 305 CCACCT 300 >seq166639 Length=720 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 47 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 105 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | ||||| ||| |||| |||||||| || ||| |||||||| | Sbjct 106 AGATGAAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCACGTCTTTGGACAGAT 165 Query 133394 CCACCT 133399 |||||| Sbjct 166 CCACCT 171 >seq82221 Length=650 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 604 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 546 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | ||||| ||| |||| |||||||| || ||| |||||||| | Sbjct 545 AGATGAAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCACGTCTTTGGACAGAT 486 Query 133394 CCACCT 133399 |||||| Sbjct 485 CCACCT 480 >seq79735 Length=1152 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1106 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 1048 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | ||||| ||| |||| |||||||| || ||| |||||||| | Sbjct 1047 AGATGAAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCACGTCTTTGGACAGAT 988 Query 133394 CCACCT 133399 |||||| Sbjct 987 CCACCT 982 >seq51709 Length=860 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 437 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 495 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | ||||| ||| |||| |||||||| || ||| |||||||| | Sbjct 496 AGATGAAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCACGTCTTTGGACAGAT 555 Query 133394 CCACCT 133399 |||||| Sbjct 556 CCACCT 561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498869187127040