Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq94697 107 1e-17 seq17551 105 5e-17 seq197746 87.8 1e-11 seq131543 86.0 5e-11 >seq94697 Length=12261 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||||||| || || || ||||| | | ||| Sbjct 4891 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATACGAAGGACA 4832 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| |||||||| | || || || || || || Sbjct 4831 TTGAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCTTGGCGCTGAGAGTCATTGAAGTAG 4772 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | ||||||| ||||| Sbjct 4771 GCAGGCACAGTCACTACGGCATTTGTTAC 4743 >seq17551 Length=12046 Score = 105 bits (116), Expect = 5e-17 Identities = 917/1473 (62%), Gaps = 20/1473 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| ||| | || | ||| || ||||| || ||||| || | || |||||||| || | Sbjct 9853 TTTGTCAACAGCGGACACGTTCAGAATGCCGTTGGCGTCGATGTCGAATGTGACCTCCAC 9794 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || ||||| |||| ||||||| ||||| ||| | | ||| | |||| || Sbjct 9793 CTGTGGGACTCCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCCAAGAGGTT 9734 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || |||||||| || | || || || | | ||||| Sbjct 9733 GTTGTCCTTGGTCATGGCTCTCTCACCCTCAAACACCTGAATTAGCACGCCTGGCTGATT 9674 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 || ||||| || | || || |||| | | ||| | ||||| || ||||||| | | Sbjct 9673 GTCCGAATATGTGGAGAAGAC-CTGGGTCTGCTTAGAGGGAATGGTGGTGTTTCGTTTGA 9615 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||||| ||||| || || || | || ||||| | |||| || || | Sbjct 9614 TTAGAGGTGTCATAACTCCACCCGCAGTCTCAATGCCCAGAGACAAGGGAGCCACGTCCA 9555 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || || | ||| | || ||||| || || | | Sbjct 9554 GCAGCAGCAGATCTTGGACATTCTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 9495 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | || || || || ||||||||||| || || | | | || |||| | | ||||| | Sbjct 9494 CTGCGCCGTACGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAA 9435 Query 517668 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | || |||| || | | || ||||| | | || || ||||| | || Sbjct 9434 AGAAGTCCTGCAAGAGCTTCT-GGATTTTGGGAATTCTTGTGGAGCCCCCAACCAGGACG 9376 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 |||||||| | || ||||||||||| || | ||| | | || ||||| || || Sbjct 9375 ATTTCATGGATCTTTGATTTATCCAACTTGGCATCTTGCAGGGCCTTCTCAACCGGCTCC 9316 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || || | || | || || || || || || ||| || | || || Sbjct 9315 AGTGTTCCTGTGAAGAGCTCCGAGTTGAGCTCCTCAAAGCGAGCCCT--CATGACGGAGG 9258 Query 517847 T-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 | || || || || || || ||||| || || | ||||| | | || || || | Sbjct 9257 TGTAGAAGTCGATGCCCTCAAACAATGAGTCGATCTCAATGCTGGCCTGGGTGCTGGAGG 9198 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT- 517963 | || | | || || | || || ||||| | |||||||| | ||| || | || Sbjct 9197 ACAGGGTCCTCTTCGCTCTCTCGCAAGCTGTACGTAGTCTTCTCACTGCTCTT--TTATT 9140 Query 517964 -TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 || | | || | |||| ||| || ||||| || || ||| | | || | || Sbjct 9139 CTGGCTGATGTCCTTCTTATGTTTCCTTTTGAATTCCTCTACAAAGTGGTTGACCATCCG 9080 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| || || || || | | || | ||||| || ||| | || | || | Sbjct 9079 GTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCTCCTGCGGTGGCTTTCACCTCAAAGAT 9020 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || | |||| | || | | || || ||| || ||||| | ||| || || || Sbjct 9019 GCCGCCCTCAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCGAAGATGAG 8960 Query 518143 TACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || || || | |||| || |||||| || ||||| || | || || || || Sbjct 8959 CACGTTGCGCTC-TCCTCTT--TTACCTTTATCCAGGCCATAGGCGATGGCTGCTGCTGT 8903 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || || || | ||||| || || | || || || ||||| || || Sbjct 8902 GGGCTCGTTGATGATCCTGAGGACATTCAGTCCCGAGATCACCCCGGCGTCTTTGGTCGC 8843 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTT 518318 ||| || || || || || ||||| || ||||| || || || |||| | || ||| Sbjct 8842 TTGCCTCTGAGAGTCATTGAAATAAGCTGGAACTGTGATGACTGCATTCGACACACTCTG 8783 Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 | || | || || || | | |||||||| | | ||| || || |||| | Sbjct 8782 T-CCCAGGTAGGCCTCAGCGATCTCCTTCATTTTGACCAGGACCATGGAGGAGATTTCCT 8724 Query 518379 CTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 518438 ||||| | | ||| | || || || || | | | || || | Sbjct 8723 CTGGGTAGAAGGCCTTTGTCTCCCCTTTGTACTCCACCTGGACTTTGGGCTTTCCGTTAT 8664 Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498 | | || || | || |||||| |||||| || || || || ||| ||||| | Sbjct 8663 CGCTGATCACCGTGAAAGGCCAGAGTTTCATGTCGGACTGGACGACGGCGTCGTTAAACT 8604 Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558 || ||||| | ||||| || ||||| || || ||||| || || || || | || | Sbjct 8603 TCCTCCCAATGAGCCGTTTGGCGTCAAAGATTGTGTTGGTGGGGTTCATGGCCACCTGGT 8544 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 ||||| ||||||||||| || || || |||||||| | ||||| ||||| | Sbjct 8543 TCTTGGCAGCATCTCCAATGAGCCTCTCGGTGTCTGTAAAGGCCACATAGCTGGGAGTGG 8484 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | | || || || || || || || || || ||||| || | || | || || |||| Sbjct 8483 TCCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTTCCGTGCTGGAAAACCCCGACAC 8424 Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAATAG 518711 || | | || || || | || || ||||||| Sbjct 8423 AAGAATAGGTGGTGCCCAGGTCGATGCCAATAG 8391 >seq197746 Length=23371 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | |||| |||||||||||||| ||||| Sbjct 5777 CAAAAACTGTGTTGGTCGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCGATCAGCC 5718 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || | ||||| || | |||||| || || || | || || || ||||| || | Sbjct 5717 TCTCAGAATCTGTGAAGGCAACATAACTGGGCGTGGTCCTGTTGCCCTGGTCATTGGCGA 5658 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || || || | ||| | Sbjct 5657 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCAAGATCGA 5598 Query 518703 TACCAA 518708 |||||| Sbjct 5597 TACCAA 5592 >seq131543 Length=14024 Score = 86.0 bits (94), Expect = 5e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| | ||| |||||||| || || || | || | ||||| ||||||||||||| Sbjct 7658 CACCAAATACAGTGTTGGTTGGGTTCATGGCCACCTGGTTCTTGGCAGCATCTCCAATCA 7599 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | || || ||||| || | ||||| || || || | || ||||| ||||| | Sbjct 7598 GTCTCTCAGTGTCTGTGAAGGCCACATAGCTGGGCGTCGTCCTGTTTCCTTGGTCATTGG 7539 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||| ||||| ||||| |||| || | | || ||||| | | || ||||| | || Sbjct 7538 CAATGATTTCCACTTTGCCATGCTGGAAGATGCCCACACAGGAATATGTGGTTCCCAGAT 7479 Query 518700 CAATACC 518706 |||| || Sbjct 7478 CAATGCC 7472 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| ||||| ||||||||||| | ||||| || |||||||| |||||||| Sbjct 9659 GCAGACACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACTTCAATCTGAGGGACA 9600 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| ||||||| || || || || | ||| | ||||| | ||||| || || Sbjct 9599 CCTCTGGGAGCAGGGGGAATACCGGTCAGCTCAAACTTGCCCAGGATGTTATTGTCCTTG 9540 Query 517379 GT 517380 || Sbjct 9539 GT 9538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3770475645461236