Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq206233 179 4e-40 seq155386 179 4e-40 seq58798 179 4e-40 seq172677 102 1e-16 seq133256 102 1e-16 seq195903 82.4 9e-11 >seq206233 Length=6715 Score = 179 bits (198), Expect = 4e-40 Identities = 657/1006 (65%), Gaps = 37/1006 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 4194 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 4253 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | ||| || | |||||||| | |||||||| || | Sbjct 4254 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 4313 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 4314 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 4373 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | | ||| ||||| || | | |||||| | || | Sbjct 4374 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 4433 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | |||||| ||| ||||| | Sbjct 4434 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACA--GGAGAGC 4489 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 4490 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 4549 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 4550 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 4609 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 4610 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 4669 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || ||||| ||| ||| |||||||| || ||| | ||||||| Sbjct 4670 GACGCTTGTTTGACTTCTCCGCT---TCAGGCACGGGATAGAAGTTTATTTCAATGATCT 4726 Query 106374 GGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAG 106430 ||| | || ||| || || ||||| | | | | ||||||| | | ||||||| Sbjct 4727 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 4783 Query 106431 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 106490 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 4784 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 4840 Query 106491 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCC 106550 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 4841 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 4900 Query 106551 CCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 106610 ||| |||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 4901 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 4960 Query 106611 CCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCG 106669 | | || ||||| |||| || ||| || | ||||| | | | | || || ||| Sbjct 4961 CAGATTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAC--GCG 5018 Query 106670 TTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728 || | || |||| ||| ||| | |||||||| ||||||||||| ||| | || Sbjct 5019 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 5077 Query 106729 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCT 106784 ||| || || || || | ||||| | || ||||| ||| | |||| Sbjct 5078 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCC- 5136 Query 106785 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 106828 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 5137 --ACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 5180 >seq155386 Length=3452 Score = 179 bits (198), Expect = 4e-40 Identities = 657/1006 (65%), Gaps = 37/1006 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 774 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 833 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | ||| || | |||||||| | |||||||| || | Sbjct 834 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 893 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 894 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 953 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | | ||| ||||| || | | |||||| | || | Sbjct 954 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 1013 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | |||||| ||| ||||| | Sbjct 1014 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACA--GGAGAGC 1069 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 1070 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 1129 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 1130 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 1189 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 1190 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 1249 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || ||||| ||| ||| |||||||| || ||| | ||||||| Sbjct 1250 GACGCTTGTTTGACTTCTCCGCT---TCAGGCACGGGATAGAAGTTTATTTCAATGATCT 1306 Query 106374 GGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAG 106430 ||| | || ||| || || ||||| | | | | ||||||| | | ||||||| Sbjct 1307 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 1363 Query 106431 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 106490 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 1364 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 1420 Query 106491 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCC 106550 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 1421 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 1480 Query 106551 CCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 106610 ||| |||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 1481 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 1540 Query 106611 CCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCG 106669 | | || ||||| |||| || ||| || | ||||| | | | | || || ||| Sbjct 1541 CAGATTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAC--GCG 1598 Query 106670 TTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728 || | || |||| ||| ||| | |||||||| ||||||||||| ||| | || Sbjct 1599 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 1657 Query 106729 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCT 106784 ||| || || || || | ||||| | || ||||| ||| | |||| Sbjct 1658 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCC- 1716 Query 106785 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 106828 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 1717 --ACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 1760 >seq58798 Length=3922 Score = 179 bits (198), Expect = 4e-40 Identities = 657/1006 (65%), Gaps = 37/1006 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 1401 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 1460 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | ||| || | |||||||| | |||||||| || | Sbjct 1461 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 1520 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 1521 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 1580 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | | ||| ||||| || | | |||||| | || | Sbjct 1581 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 1640 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | |||||| ||| ||||| | Sbjct 1641 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGACA--GGAGAGC 1696 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 1697 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 1756 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 1757 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 1816 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 1817 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 1876 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || ||||| ||| ||| |||||||| || ||| | ||||||| Sbjct 1877 GACGCTTGTTTGACTTCTCCGCT---TCAGGCACGGGATAGAAGTTTATTTCAATGATCT 1933 Query 106374 GGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAG 106430 ||| | || ||| || || ||||| | | | | ||||||| | | ||||||| Sbjct 1934 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 1990 Query 106431 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 106490 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 1991 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 2047 Query 106491 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCC 106550 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 2048 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 2107 Query 106551 CCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 106610 ||| |||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 2108 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 2167 Query 106611 CCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCG 106669 | | || ||||| |||| || ||| || | ||||| | | | | || || ||| Sbjct 2168 CAGATTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAC--GCG 2225 Query 106670 TTGGCCCGTCCC-TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728 || | || |||| ||| ||| | |||||||| ||||||||||| ||| | || Sbjct 2226 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 2284 Query 106729 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCT 106784 ||| || || || || | ||||| | || ||||| ||| | |||| Sbjct 2285 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCC- 2343 Query 106785 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 106828 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 2344 --ACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 2387 >seq172677 Length=14965 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || ||||||||||| ||| ||||| |||| ||| || || || || Sbjct 3054 CTCATCTTTGCTTGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCC 2995 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || || Sbjct 2994 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 2935 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| |||| | || || | |||||| Sbjct 2934 GGTTTCTGTCTGAGACTCAATGATGGCGTGCCACAC 2899 >seq133256 Length=12775 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || ||||||||||| ||| ||||| |||| ||| || || || || Sbjct 9842 CTCATCTTTGCTTGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCC 9783 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| || || || Sbjct 9782 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 9723 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| |||| | || || | |||||| Sbjct 9722 GGTTTCTGTCTGAGACTCAATGATGGCGTGCCACAC 9687 >seq195903 Length=4854 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || || || ||| || ||||| ||||| | || | ||||| Sbjct 1616 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCT 1557 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 | | |||||| ||||| |||||| || ||||||||||| |||||||| |||||| | Sbjct 1556 TGAGCCAATAGATAGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 1497 Query 117413 CAAAAAGGCGCTC 117425 | | || ||||| Sbjct 1496 CCACAATTCGCTC 1484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588443118291440