Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq162191 107 1e-18 >seq162191 Length=1649 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 1584 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCTTCC 1525 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || ||||| || || || ||||||||| | || | ||||||||||| Sbjct 1524 AGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1465 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || |||| | ||| || || | ||| ||||| || Sbjct 1464 ATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTA 1405 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| |||||||||||||| Sbjct 1404 CCGGTCAGGGTCTTGACAAAGATCTGCAT 1376 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 1356 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCG 1297 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 1296 AGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1237 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || || || | || ||| || || | || ||||| | Sbjct 1236 ATCTTGGCCTTGAC--ATTCTCAATGGAGTCGCTGGGCTCCACCTCCAAAGTGATGGTCT 1179 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||||||||||||||| || Sbjct 1178 TCCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323808651849168