Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq17551 143 2e-28 seq197746 113 4e-19 seq94697 113 4e-19 seq131543 91.5 1e-12 >seq17551 Length=12046 Score = 143 bits (158), Expect = 2e-28 Identities = 452/696 (65%), Gaps = 6/696 (1%) Strand=Plus/Plus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 ||| | || |||||||| ||||| || | | || || || | || || ||| ||| Sbjct 9161 CTACGTACAGCTTGCGAGAGAGCGAAGAGGACCCTGTCCTCCAGCACCCAGGCCAGCATT 9220 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC--GAGGGCCAAAT 552024 || | || ||||| |||||||| || || | ||| ||| || |||||| | Sbjct 9221 GAGATCGACTCATTGTTTGAGGGCATCGACTTC--TACACCTCCGTCATGAGGGCTCGCT 9278 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAA 552084 |||| || | || || ||||| | | |||| | || || || || | | | Sbjct 9279 TTGAGGAGCTCAACTCGGAGCTCTTCACAGGAACACTGGAGCCGGTTGAGAAGGCCCTGC 9338 Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 |||| | ||| | |||||||| || | |||||||| || || ||||| || || |||| Sbjct 9339 AAGATGCCAAGTTGGATAAATCAAAGATCCATGAAATCGTCCTGGTTGGGGGCTCCACAA 9398 Query 552145 GAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 ||||||| ||||| | | | || || ||| ||| ||||| | | || | || | Sbjct 9399 GAATTCCCAAAATCCAGAAGCTCTTGCAGGACTTCTTT-AATGGCAGAGAACTGAACAAG 9457 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 || | || |||||||| ||||| || || || || ||| | || || ||||| || Sbjct 9458 AGCATCAACCCAGATGAAGCTGTGGCGTACGGCGCAGCAGTCCAGGCTGCTATCCTCATG 9517 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || | || || || | ||| || | | || | || || |||| | ||||| Sbjct 9518 GGTGACACCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCTTGTCTCTG 9577 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | || || | || || ||||||| ||| ||| | |||| || || ||||| Sbjct 9578 GGCATTGAGACTGCGGGTGGAGTTATGACACCTCTAATCAAACGAAACACCACCATTCCC 9637 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 | ||| | | | || || || || ||||| || ||||| | | || |||||| Sbjct 9638 TCTAAGCAGACCCAGGTCTTCTCCACATATTCGGACAATCAGCCAGGCGTGCTAATTCAG 9697 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 | ||||| || || ||| | || || || || || | | || | ||| | | Sbjct 9698 GTGTTTGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTC 9757 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 |||||| ||||||||||| || ||||| || || | || || || ||||| ||||| Sbjct 9758 ACAGGTATCCCTCCTGCTCCCCGAGGAGTCCCACAGGTGGAGGTCACATTCGACATCGAC 9817 Query 552564 GCCAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||||| || ||| |||| ||| | ||| ||| ||| Sbjct 9818 GCCAACGGCATTCTGAACGTGTCCGCTGTTGACAAA 9853 >seq197746 Length=23371 Score = 113 bits (124), Expect = 4e-19 Identities = 105/131 (80%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || |||||||| || || || ||||| || || || || || || |||| Sbjct 6512 ATGCTGTAATCACGGTACCAGCCTACTTCAACGACTCCCAGCGCCAGGCCACAAAGGATG 6571 Query 550458 CTGG-ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 |||| ||| || ||||||||||||| || ||||| ||||||||||| || |||||||| Sbjct 6572 CTGGGACG-ATCTCTGGACTTAATGTCCTGCGTATCATCAATGAACCAACCGCTGCTGCC 6630 Query 550517 CTTGCATATGG 550527 |||| ||||| Sbjct 6631 ATTGCCTATGG 6641 >seq94697 Length=12261 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| || || || || |||||||| || || ||||| || ||||||| Sbjct 4750 ATGCCGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAAGCCACCAAAGATG 4809 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 4810 CAGGGACCATTTCTGGGCTCAATGTCCTTCGTATTATCAACGAGCCGACTGCTGCTGCTA 4869 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 4870 TTGCTTATGGCCTGGACAAA 4889 >seq131543 Length=14024 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || || || || || || || ||||| || || ||||| || ||||||| Sbjct 8275 ATGCAGTTGTCACAGTTCCTGCTTACTTCAACGACTCCCAGCGCCAAGCCACCAAAGATG 8334 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || || || || ||||| | || || |||||||| || ||||| || ||| Sbjct 8335 CTGGAACCATCGCCGGGCTCAATGTGTTGCGCATCATCAATGAGCCCACTGCAGCAGCAA 8394 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 8395 TTGCTTATGGCCTGGACAAA 8414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4018269262357940