Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq147452 161 8e-35 seq199867 123 2e-23 >seq147452 Length=2500 Score = 161 bits (178), Expect = 8e-35 Identities = 140/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 1961 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 1902 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| |||||||| || || | |||||| ||||||||||| ||||| ||||| | | Sbjct 1901 ACCCCGAGGCCCATGTCGCCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1842 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| || |||||| || || |||||||||||| || |||| Sbjct 1841 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 1788 Score = 140 bits (154), Expect = 3e-28 Identities = 138/177 (78%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 734 CATGTTTGTGTACTCGGCGCCGAAGTGCCTCCACTGGAACCCGTACACGGGTCCCAGGTC 675 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| || || || | ||| || ||||||| ||| | | || |||||||| || Sbjct 674 TCCTTCCTCTCTATCAGTGAACCCGAGGTTGTCCAGGAAGCCCCGCGACCCGTTGGCTTC 615 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30326 ||| ||||| ||||| ||||| || ||||| |||| ||||| || || |||| ||| Sbjct 614 CCAAATCTTCACCCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC-CTGAGGAA 559 >seq199867 Length=9099 Score = 123 bits (136), Expect = 2e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||||||||||||||| | ||| ||||||| |||||||||| ||||| || ||| Sbjct 9029 TTGAGCTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCCGGG 8970 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 || || ||||| || ||||||||||| |||||||| |||||||||||| Sbjct 8969 ATAGAAAACCATGTTTTTCTACCCATGATCACCACATTCTGCTTGCCT 8922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407579234490338