Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq135289 143 3e-29 seq71836 143 3e-29 seq62555 143 3e-29 >seq135289 Length=1586 Score = 143 bits (158), Expect = 3e-29 Identities = 563/866 (65%), Gaps = 36/866 (4%) Strand=Plus/Minus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT-AGGATCCAGTGCACGTCTCCGGA 160156 || || |||||||| ||||| || || || | | |||| ||| | | ||| |||| Sbjct 1450 TCAAACTTATTTGCAAACAGCTGATG----TTGTCTCAGGAGCCACGGGAGGTCACCGGT 1395 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| ||||| | | | ||| |||| |||| | |||| ||||||| || Sbjct 1394 TCCGTACACACAGACTGTTCTTCTGTAAGCGCCCATGCAGTGATAGTACGGAGCTCCATT 1335 Query 160217 CGCCACGTCACCTTCGTAG-TACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 |||||| ||| | ||| || ||||||||| | | || | || |||||||| | Sbjct 1334 TCTCACGTCTCCTGC-TAGATAGCTCCACTTCACCACACGAGCGAGGGCTTGCATGTCTG 1276 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | || || ||| | ||| | | || ||||| |||||| |||||||| | Sbjct 1275 ACACATCATACTTGATGTTGGCGGGCATTGATCCAGGAACAGAGGGCATTCGCTGTAGAG 1216 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA 160395 ||||||||| ||| ||||| |||||| | |||||| | ||| || |||| || | Sbjct 1215 TGGCCCACAAGTGCTCGTCAGGGCTGAATGTGTCCCTCTCCCAGTCAATGAGCT----GC 1160 Query 160396 TTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | ||||| |||| ||| || || | || | | |||||| || |||||||| || Sbjct 1159 TGAACCTCTCTGTCCTGCATCACATGTCTCACAAAAGCTCTGGTGACCACAAAGTAAGCA 1100 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGAC--CGGTGTTA- 160508 | || | ||| || || || || || || | | |||| || | || | || || Sbjct 1099 TTTCCTGTGAACATGGGGCTGCTGATGGGTGGGG-GACTTT-TCTTCACATCTGTCTTGA 1042 Query 160509 -GACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGT 160565 |||| | | || || || | | | ||| | | | |||||| | | Sbjct 1041 TGACAGTATTAGTTACATT-----GTAATGATACAGCCAACGGCCTTTCTTGTAGTCATT 987 Query 160566 GGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTC-GAGCGATTTCAGCTGCTTGACGAT 160624 || || || | ||| | ||||| | || || ||| | ||||| | | || Sbjct 986 GG--TGGCCTCAGACTCCATGCTGTTC-CTCCCTCTGAGGGCCTTCAGTACCCGAATCAT 930 Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684 || | || || |||| || ||||| | || || ||| | || |||| |||| | Sbjct 929 TTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGTGTTGAGCAGGTACCTCCACTG 870 Query 160685 CGCGCTC-AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGG 160743 | | || || |||| || ||||||| || | |||||||||||| ||| ||| | Sbjct 869 GACCTGCGAGCTCA-GCAGATCTTTCATGCAGTTCAAATCTGCCTGCACTCGGGACCATG 811 Query 160744 AAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGA 160803 | ||||| || || | |||| | ||||||| ||||| |||||| || || || | | Sbjct 810 AGGCGTATACCACACTTTCTAATCTACTGGCTACAAACACGTTAGGAAAGCAGGAAATAA 751 Query 160804 TTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATAC 160862 || || |||| ||| ||| ||||| | ||||| ||||||| ||||| || || Sbjct 750 TTACCGCCACAGCCTTGTGGAA-ATCTTTAGGGGCTTTCTGGTCCACATGCACACAGTAG 692 Query 160863 AGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGG 160922 | ||||||||| | || | || | || | | ||| |||||||||||||| | ||| Sbjct 691 ATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGCTCAAACATCTCTATCTTCTCGTGG 632 Query 160923 ATCACGATAGAGTAGGCTATCGGAAA 160948 ||||| || |||||||| || || || Sbjct 631 ATCACCATGGAGTAGGCAATGGGGAA 606 >seq71836 Length=1774 Score = 143 bits (158), Expect = 3e-29 Identities = 563/866 (65%), Gaps = 36/866 (4%) Strand=Plus/Minus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT-AGGATCCAGTGCACGTCTCCGGA 160156 || || |||||||| ||||| || || || | | |||| ||| | | ||| |||| Sbjct 1638 TCAAACTTATTTGCAAACAGCTGATG----TTGTCTCAGGAGCCACGGGAGGTCACCGGT 1583 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| ||||| | | | ||| |||| |||| | |||| ||||||| || Sbjct 1582 TCCGTACACACAGACTGTTCTTCTGTAAGCGCCCATGCAGTGATAGTACGGAGCTCCATT 1523 Query 160217 CGCCACGTCACCTTCGTAG-TACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 |||||| ||| | ||| || ||||||||| | | || | || |||||||| | Sbjct 1522 TCTCACGTCTCCTGC-TAGATAGCTCCACTTCACCACACGAGCGAGGGCTTGCATGTCTG 1464 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | || || ||| | ||| | | || ||||| |||||| |||||||| | Sbjct 1463 ACACATCATACTTGATGTTGGCGGGCATTGATCCAGGAACAGAGGGCATTCGCTGTAGAG 1404 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA 160395 ||||||||| ||| ||||| |||||| | |||||| | ||| || |||| || | Sbjct 1403 TGGCCCACAAGTGCTCGTCAGGGCTGAATGTGTCCCTCTCCCAGTCAATGAGCT----GC 1348 Query 160396 TTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | ||||| |||| ||| || || | || | | |||||| || |||||||| || Sbjct 1347 TGAACCTCTCTGTCCTGCATCACATGTCTCACAAAAGCTCTGGTGACCACAAAGTAAGCA 1288 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGAC--CGGTGTTA- 160508 | || | ||| || || || || || || | | |||| || | || | || || Sbjct 1287 TTTCCTGTGAACATGGGGCTGCTGATGGGTGGGG-GACTTT-TCTTCACATCTGTCTTGA 1230 Query 160509 -GACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGT 160565 |||| | | || || || | | | ||| | | | |||||| | | Sbjct 1229 TGACAGTATTAGTTACATT-----GTAATGATACAGCCAACGGCCTTTCTTGTAGTCATT 1175 Query 160566 GGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTC-GAGCGATTTCAGCTGCTTGACGAT 160624 || || || | ||| | ||||| | || || ||| | ||||| | | || Sbjct 1174 GG--TGGCCTCAGACTCCATGCTGTTC-CTCCCTCTGAGGGCCTTCAGTACCCGAATCAT 1118 Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684 || | || || |||| || ||||| | || || ||| | || |||| |||| | Sbjct 1117 TTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGTGTTGAGCAGGTACCTCCACTG 1058 Query 160685 CGCGCTC-AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGG 160743 | | || || |||| || ||||||| || | |||||||||||| ||| ||| | Sbjct 1057 GACCTGCGAGCTCA-GCAGATCTTTCATGCAGTTCAAATCTGCCTGCACTCGGGACCATG 999 Query 160744 AAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGA 160803 | ||||| || || | |||| | ||||||| ||||| |||||| || || || | | Sbjct 998 AGGCGTATACCACACTTTCTAATCTACTGGCTACAAACACGTTAGGAAAGCAGGAAATAA 939 Query 160804 TTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATAC 160862 || || |||| ||| ||| ||||| | ||||| ||||||| ||||| || || Sbjct 938 TTACCGCCACAGCCTTGTGGAA-ATCTTTAGGGGCTTTCTGGTCCACATGCACACAGTAG 880 Query 160863 AGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGG 160922 | ||||||||| | || | || | || | | ||| |||||||||||||| | ||| Sbjct 879 ATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGCTCAAACATCTCTATCTTCTCGTGG 820 Query 160923 ATCACGATAGAGTAGGCTATCGGAAA 160948 ||||| || |||||||| || || || Sbjct 819 ATCACCATGGAGTAGGCAATGGGGAA 794 >seq62555 Length=2559 Score = 143 bits (158), Expect = 3e-29 Identities = 563/866 (65%), Gaps = 36/866 (4%) Strand=Plus/Plus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT-AGGATCCAGTGCACGTCTCCGGA 160156 || || |||||||| ||||| || || || | | |||| ||| | | ||| |||| Sbjct 1557 TCAAACTTATTTGCAAACAGCTGATG----TTGTCTCAGGAGCCACGGGAGGTCACCGGT 1612 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| ||||| | | | ||| |||| |||| | |||| ||||||| || Sbjct 1613 TCCGTACACACAGACTGTTCTTCTGTAAGCGCCCATGCAGTGATAGTACGGAGCTCCATT 1672 Query 160217 CGCCACGTCACCTTCGTAG-TACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGG 160275 |||||| ||| | ||| || ||||||||| | | || | || |||||||| | Sbjct 1673 TCTCACGTCTCCTGC-TAGATAGCTCCACTTCACCACACGAGCGAGGGCTTGCATGTCTG 1731 Query 160276 AGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | || || ||| | ||| | | || ||||| |||||| |||||||| | Sbjct 1732 ACACATCATACTTGATGTTGGCGGGCATTGATCCAGGAACAGAGGGCATTCGCTGTAGAG 1791 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA 160395 ||||||||| ||| ||||| |||||| | |||||| | ||| || |||| || | Sbjct 1792 TGGCCCACAAGTGCTCGTCAGGGCTGAATGTGTCCCTCTCCCAGTCAATGAGCT----GC 1847 Query 160396 TTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCG 160451 | ||||| |||| ||| || || | || | | |||||| || |||||||| || Sbjct 1848 TGAACCTCTCTGTCCTGCATCACATGTCTCACAAAAGCTCTGGTGACCACAAAGTAAGCA 1907 Query 160452 CTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGAC--CGGTGTTA- 160508 | || | ||| || || || || || || | | |||| || | || | || || Sbjct 1908 TTTCCTGTGAACATGGGGCTGCTGATGGGTGGGG-GACTTT-TCTTCACATCTGTCTTGA 1965 Query 160509 -GACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGT 160565 |||| | | || || || | | | ||| | | | |||||| | | Sbjct 1966 TGACAGTATTAGTTACATT-----GTAATGATACAGCCAACGGCCTTTCTTGTAGTCATT 2020 Query 160566 GGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTC-GAGCGATTTCAGCTGCTTGACGAT 160624 || || || | ||| | ||||| | || || ||| | ||||| | | || Sbjct 2021 GG--TGGCCTCAGACTCCATGCTGTTC-CTCCCTCTGAGGGCCTTCAGTACCCGAATCAT 2077 Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684 || | || || |||| || ||||| | || || ||| | || |||| |||| | Sbjct 2078 TTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGTGTTGAGCAGGTACCTCCACTG 2137 Query 160685 CGCGCTC-AGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGG 160743 | | || || |||| || ||||||| || | |||||||||||| ||| ||| | Sbjct 2138 GACCTGCGAGCTCA-GCAGATCTTTCATGCAGTTCAAATCTGCCTGCACTCGGGACCATG 2196 Query 160744 AAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGA 160803 | ||||| || || | |||| | ||||||| ||||| |||||| || || || | | Sbjct 2197 AGGCGTATACCACACTTTCTAATCTACTGGCTACAAACACGTTAGGAAAGCAGGAAATAA 2256 Query 160804 TTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATAC 160862 || || |||| ||| ||| ||||| | ||||| ||||||| ||||| || || Sbjct 2257 TTACCGCCACAGCCTTGTGGAA-ATCTTTAGGGGCTTTCTGGTCCACATGCACACAGTAG 2315 Query 160863 AGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGG 160922 | ||||||||| | || | || | || | | ||| |||||||||||||| | ||| Sbjct 2316 ATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGCTCAAACATCTCTATCTTCTCGTGG 2375 Query 160923 ATCACGATAGAGTAGGCTATCGGAAA 160948 ||||| || |||||||| || || || Sbjct 2376 ATCACCATGGAGTAGGCAATGGGGAA 2401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575714779168560