Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq206233 167 3e-36 seq155386 167 3e-36 seq58798 167 3e-36 seq172677 100 3e-16 seq133256 100 3e-16 seq195903 82.4 9e-11 >seq206233 Length=6715 Score = 167 bits (184), Expect = 3e-36 Identities = 653/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Minus Query 75694 CTTTTC-AT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA 75751 |||||| || |||||||||| || ||||| ||||||| | |||| |||| | ||| Sbjct 5180 CTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAGGAGGGT---GGAGAGCAACCAA 5124 Query 75752 ---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGA 75807 ||||| || | ||||| | || || || || ||| || | ||| ||||| Sbjct 5123 GACTGGTCCCTGATGTGTCCCAGCGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGA 5065 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC 75867 |||||| |||||||| | ||| ||||||| | | ||| || || || Sbjct 5064 GTTTGAGAAGCTCTACACCTCCTTTGAGAAGGAGGGGAAGGTCAA-ACGCGTGGTGAAGG 5006 Query 75868 CGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | | | | ||| | || ||| || | || ||||| || |||| || || || |||| Sbjct 5005 CTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGC 4946 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | ||||| || || || |||| |||||| ||||| |||| |||| |||||| | Sbjct 4945 TGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCA 4886 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 || || ||||| ||||| | || ||||| | || ||| || || |||||| Sbjct 4885 GCAACCTCTGCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATC 4826 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 |||| || ||||| || | ||| |||| ||| | |||||||| | | ||| Sbjct 4825 TGGCCTCCATCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAA 4769 Query 76107 AACTTCATGAAATCA-CAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 |||| | | | | ||||| || || ||| || | ||| ||||||| | || Sbjct 4768 AACTAGAGGCCGTGACCAAAGTCATCGT---CAAGAACTTGAACAAGATCATTGAAATAA 4712 Query 76164 ATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 | || |||||||| ||| ||| ||||| || | ||| ||||| || || || Sbjct 4711 ACTTCTATCCCGTGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAA 4655 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | ||||| |||||| | || || | || || | || ||| | ||||| | Sbjct 4654 TCGGTGTACAAGGTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCG 4595 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 |||| || | |||| || |||||||| ||||| || |||| |||||||||||| Sbjct 4594 AAGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGA 4535 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-C 76399 | || || |||| | | | || |||| ||||| | || || ||||| ||| Sbjct 4534 GCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--TGTCAG 4477 Query 76400 CAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGG 76456 |||||| | || |||| || ||||||| || || || | | | || | |||||| Sbjct 4476 CAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCA-CCGACCTGCTGGACTGG 4419 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 | | || ||||| ||| || | || | | ||||| || || |||| || Sbjct 4418 AAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCG 4359 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || |||||||||||||| ||| |||| || || || | | | || || ||||| Sbjct 4358 ATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACC 4299 Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636 | ||||||||| | || ||| | || ||||| || |||||| || || Sbjct 4298 AGCAACATCTACACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTG 4239 Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 4238 CTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 4194 >seq155386 Length=3452 Score = 167 bits (184), Expect = 3e-36 Identities = 653/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Minus Query 75694 CTTTTC-AT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA 75751 |||||| || |||||||||| || ||||| ||||||| | |||| |||| | ||| Sbjct 1760 CTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAGGAGGGT---GGAGAGCAACCAA 1704 Query 75752 ---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGA 75807 ||||| || | ||||| | || || || || ||| || | ||| ||||| Sbjct 1703 GACTGGTCCCTGATGTGTCCCAGCGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGA 1645 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC 75867 |||||| |||||||| | ||| ||||||| | | ||| || || || Sbjct 1644 GTTTGAGAAGCTCTACACCTCCTTTGAGAAGGAGGGGAAGGTCAA-ACGCGTGGTGAAGG 1586 Query 75868 CGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | | | | ||| | || ||| || | || ||||| || |||| || || || |||| Sbjct 1585 CTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGC 1526 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | ||||| || || || |||| |||||| ||||| |||| |||| |||||| | Sbjct 1525 TGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCA 1466 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 || || ||||| ||||| | || ||||| | || ||| || || |||||| Sbjct 1465 GCAACCTCTGCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATC 1406 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 |||| || ||||| || | ||| |||| ||| | |||||||| | | ||| Sbjct 1405 TGGCCTCCATCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAA 1349 Query 76107 AACTTCATGAAATCA-CAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 |||| | | | | ||||| || || ||| || | ||| ||||||| | || Sbjct 1348 AACTAGAGGCCGTGACCAAAGTCATCGT---CAAGAACTTGAACAAGATCATTGAAATAA 1292 Query 76164 ATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 | || |||||||| ||| ||| ||||| || | ||| ||||| || || || Sbjct 1291 ACTTCTATCCCGTGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAA 1235 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | ||||| |||||| | || || | || || | || ||| | ||||| | Sbjct 1234 TCGGTGTACAAGGTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCG 1175 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 |||| || | |||| || |||||||| ||||| || |||| |||||||||||| Sbjct 1174 AAGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGA 1115 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-C 76399 | || || |||| | | | || |||| ||||| | || || ||||| ||| Sbjct 1114 GCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--TGTCAG 1057 Query 76400 CAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGG 76456 |||||| | || |||| || ||||||| || || || | | | || | |||||| Sbjct 1056 CAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCA-CCGACCTGCTGGACTGG 999 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 | | || ||||| ||| || | || | | ||||| || || |||| || Sbjct 998 AAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCG 939 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || |||||||||||||| ||| |||| || || || | | | || || ||||| Sbjct 938 ATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACC 879 Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636 | ||||||||| | || ||| | || ||||| || |||||| || || Sbjct 878 AGCAACATCTACACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTG 819 Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 818 CTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 774 >seq58798 Length=3922 Score = 167 bits (184), Expect = 3e-36 Identities = 653/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Minus Query 75694 CTTTTC-AT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAA 75751 |||||| || |||||||||| || ||||| ||||||| | |||| |||| | ||| Sbjct 2387 CTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAGGAGGGT---GGAGAGCAACCAA 2331 Query 75752 ---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGA 75807 ||||| || | ||||| | || || || || ||| || | ||| ||||| Sbjct 2330 GACTGGTCCCTGATGTGTCCCAGCGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGA 2272 Query 75808 GTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC 75867 |||||| |||||||| | ||| ||||||| | | ||| || || || Sbjct 2271 GTTTGAGAAGCTCTACACCTCCTTTGAGAAGGAGGGGAAGGTCAA-ACGCGTGGTGAAGG 2213 Query 75868 CGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGC 75926 | | | | | ||| | || ||| || | || ||||| || |||| || || || |||| Sbjct 2212 CTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGC 2153 Query 75927 TTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCT 75986 | ||||| || || || |||| |||||| ||||| |||| |||| |||||| | Sbjct 2152 TGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCA 2093 Query 75987 CAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATT 76046 || || ||||| ||||| | || ||||| | || ||| || || |||||| Sbjct 2092 GCAACCTCTGCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATC 2033 Query 76047 TGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAA 76106 |||| || ||||| || | ||| |||| ||| | |||||||| | | ||| Sbjct 2032 TGGCCTCCATCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAA 1976 Query 76107 AACTTCATGAAATCA-CAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 |||| | | | | ||||| || || ||| || | ||| ||||||| | || Sbjct 1975 AACTAGAGGCCGTGACCAAAGTCATCGT---CAAGAACTTGAACAAGATCATTGAAATAA 1919 Query 76164 ATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTT 76220 | || |||||||| ||| ||| ||||| || | ||| ||||| || || || Sbjct 1918 ACTTCTATCCCGTGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAA 1862 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | ||||| |||||| | || || | || || | || ||| | ||||| | Sbjct 1861 TCGGTGTACAAGGTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCG 1802 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 |||| || | |||| || |||||||| ||||| || |||| |||||||||||| Sbjct 1801 AAGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGA 1742 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-C 76399 | || || |||| | | | || |||| ||||| | || || ||||| ||| Sbjct 1741 GCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCC--TGTCAG 1684 Query 76400 CAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGG 76456 |||||| | || |||| || ||||||| || || || | | | || | |||||| Sbjct 1683 CAAGGGCATCCTGCAGTACGACATGTGGG-AGAAGACGCCCA-CCGACCTGCTGGACTGG 1626 Query 76457 GATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 76516 | | || ||||| ||| || | || | | ||||| || || |||| || Sbjct 1625 AAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCG 1566 Query 76517 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACA 76576 ||||| || |||||||||||||| ||| |||| || || || | | | || || ||||| Sbjct 1565 ATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACC 1506 Query 76577 ACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTC 76636 | ||||||||| | || ||| | || ||||| || |||||| || || Sbjct 1505 AGCAACATCTACACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTG 1446 Query 76637 GTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 1445 CTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 1401 >seq172677 Length=14965 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || || || |||||||| ||||| |||||||| || || |||| |||||| Sbjct 2920 TCTCAGACAGAAACCGGTACACCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGC 2979 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || || || | ||||| ||||| || ||| |||||||| Sbjct 2980 AACCAGCAGAATCTGGGCACCATAAAATCCAGCAATCTGTGCACAGAGATTGTAGAGTAC 3039 Query 76016 ACAGATAAGGATGAG 76030 ||| || |||||| Sbjct 3040 ACAAGCAAAGATGAG 3054 >seq133256 Length=12775 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || || || |||||||| ||||| |||||||| || || |||| |||||| Sbjct 9708 TCTCAGACAGAAACCGGTACACCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGC 9767 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || || || | ||||| ||||| || ||| |||||||| Sbjct 9768 AACCAGCAGAATCTGGGCACCATAAAATCCAGCAATCTGTGCACAGAGATTGTAGAGTAC 9827 Query 76016 ACAGATAAGGATGAG 76030 ||| || |||||| Sbjct 9828 ACAAGCAAAGATGAG 9842 >seq195903 Length=4854 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || |||||| |||||||| ||||||||||| || |||||| ||| Sbjct 1484 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCT 1543 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || |||||| | |||||| | || | ||||| ||||| || ||| || || || ||| Sbjct 1544 ATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 1603 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 1604 AGCAGGGATGAGG 1616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595014745737280