Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq94697 111 1e-18 seq17551 95.1 9e-14 seq131543 86.0 5e-11 >seq94697 Length=12261 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||||||| || || || ||||| | | ||| Sbjct 4891 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCGTTGATAATACGAAGGACA 4832 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| |||||||| | || || || || || || Sbjct 4831 TTGAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCTTGGCGCTGAGAGTCATTGAAGTAG 4772 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | ||||||| |||||| Sbjct 4771 GCAGGCACAGTCACTACGGCATTTGTTAC 4743 >seq17551 Length=12046 Score = 95.1 bits (104), Expect = 9e-14 Identities = 916/1474 (62%), Gaps = 22/1474 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| ||| | || | ||| || ||||| || ||||| || | || |||||||| || | Sbjct 9853 TTTGTCAACAGCGGACACGTTCAGAATGCCGTTGGCGTCGATGTCGAATGTGACCTCCAC 9794 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || ||||| |||| ||||||| ||||| ||| | | ||| | |||| || Sbjct 9793 CTGTGGGACTCCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCCAAGAGGTT 9734 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || |||||||| || | || || || | | ||||| Sbjct 9733 GTTGTCCTTGGTCATGGCTCTCTCACCCTCAAACACCTGAATTAGCACGCCTGGCTGATT 9674 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 || ||||| || | || || |||| | | ||| | ||||| || ||||||| | | Sbjct 9673 GTCCGAATATGTGGAGAAGAC-CTGGGTCTGCTTAGAGGGAATGGTGGTGTTTCGTTTGA 9615 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||||| ||||| || || || | || ||||| | |||| || || | Sbjct 9614 TTAGAGGTGTCATAACTCCACCCGCAGTCTCAATGCCCAGAGACAAGGGAGCCACGTCCA 9555 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || || | ||| | || ||||| || || | | Sbjct 9554 GCAGCAGCAGATCTTGGACATTCTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 9495 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | || || || || ||||||||||| || || | | | || |||| | | ||||| | Sbjct 9494 CTGCGCCGTACGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAA 9435 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | || |||| || | | || ||||| | | || || ||||| | || Sbjct 9434 AGAAGTCCTGCAAGAGCTTCT-GGATTTTGGGAATTCTTGTGGAGCCCCCAACCAGGACG 9376 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 |||||||| | || ||||||||||| || | ||| | | || ||||| || || Sbjct 9375 ATTTCATGGATCTTTGATTTATCCAACTTGGCATCTTGCAGGGCCTTCTCAACCGGCTCC 9316 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || || | || | || || || || || || ||| || | || || Sbjct 9315 AGTGTTCCTGTGAAGAGCTCCGAGTTGAGCTCCTCAAAGCGAGCCCT--CATGACGGAGG 9258 Query 282014 T-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 | || || || || || || ||||| || || | ||||| | | || || || | Sbjct 9257 TGTAGAAGTCGATGCCCTCAAACAATGAGTCGATCTCAATGCTGGCCTGGGTGCTGGAGG 9198 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT- 282130 | || | | || || | || || ||||| | |||||||| | ||| || | || Sbjct 9197 ACAGGGTCCTCTTCGCTCTCTCGCAAGCTGTACGTAGTCTTCTCACTGCTCTT--TTATT 9140 Query 282131 -TGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 || | | || | |||| ||| || ||||| || || ||| | | || | || Sbjct 9139 CTGGCTGATGTCCTTCTTATGTTTCCTTTTGAATTCCTCTACAAAGTGGTTGACCATCCG 9080 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| || || || || | | || | ||||| || ||| | || | || | Sbjct 9079 GTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCTCCTGCGGTGGCTTTCACCTCAAAGAT 9020 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 || | |||| | || | | || || ||| || ||||| | ||| || || || Sbjct 9019 GCCGCCCTCAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCGAAGATGAG 8960 Query 282310 TACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || || || | |||| || |||||| || ||||| || | || || || || Sbjct 8959 CACGTTGCGCTC-TCCTCTT--TTACCTTTATCCAGGCCATAGGCGATGGCTGCTGCTGT 8903 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || || || || || | ||||| || || | || || || ||||| || || Sbjct 8902 GGGCTCGTTGATGATCCTGAGGACATTCAGTCCCGAGATCACCCCGGCGTCTTTGGTCGC 8843 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 ||| || || || || || ||||| || ||||| || || || |||| | || | Sbjct 8842 TTGCCTCTGAGAGTCATTGAAATAAGCTGGAACTGTGATGACTGCATTCGACACACTCTG 8783 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 ||| | || || || | | |||||||| | | ||| || || |||| || Sbjct 8782 TCCCAGGTAGGCCTCAGCGATCTCCTTCATTTTGACCAGGACCATGGAGGAGATTTCCTC 8723 Query 282547 TGGAGAATATTGC--TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 ||| | | | || ||| | | |||| || || | | | || || | Sbjct 8722 TGG-GTAGAAGGCCTTTGTCTCCCCTTTG-TACTCCACCTGGACTTTGGGCTTTCCGTTA 8665 Query 282605 ACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAA 282664 | | || || | || ||||| |||||| || || || || ||| ||||| Sbjct 8664 TCGCTGATCACCGTGAAAGGCCAGAGTTTCATGTCGGACTGGACGACGGCGTCGTTAAAC 8605 Query 282665 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724 | || ||||| | ||||| || ||||| || || ||||| || || | || | || Sbjct 8604 TTCCTCCCAATGAGCCGTTTGGCGTCAAAGATTGTGTTGGTGGGGTTCATGGCCACCTGG 8545 Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 282784 | ||||| ||||||||||| || || || |||||||| | ||||| ||||| Sbjct 8544 TTCTTGGCAGCATCTCCAATGAGCCTCTCGGTGTCTGTAAAGGCCACATAGCTGGGAGTG 8485 Query 282785 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 282844 || | || || || || || || || || || ||||| || | || | || || ||| Sbjct 8484 GTCCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTTCCGTGCTGGAAAACCCCGACA 8425 Query 282845 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 282878 ||| | | || || || | || || ||||||| Sbjct 8424 CAAGAATAGGTGGTGCCCAGGTCGATGCCAATAG 8391 >seq131543 Length=14024 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| ||||| ||||||||||| | ||||| || |||||||| |||||||| Sbjct 9659 GCAGACACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACTTCAATCTGAGGGACA 9600 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| ||||||| || || || || | ||| | ||||| | ||||| || || Sbjct 9599 CCTCTGGGAGCAGGGGGAATACCGGTCAGCTCAAACTTGCCCAGGATGTTATTGTCCTTG 9540 Query 281546 GT 281547 || Sbjct 9539 GT 9538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3730393636546356