Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq162191 140 6e-28 seq21003 100 6e-16 seq175001 84.2 4e-11 >seq162191 Length=1649 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || || ||||| || || || ||||| Sbjct 1602 CCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1543 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || ||||| ||||||||||| || | || || ||||| || Sbjct 1542 AGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGG 1483 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| ||||| |||| || || Sbjct 1482 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACC 1423 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 1422 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCAT 1376 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || || ||||| || || || ||||| Sbjct 1374 CCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1315 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || ||||| |||||||||||||| || | || || || || || Sbjct 1314 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGG 1255 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| ||||| | || | || || || Sbjct 1254 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCACC 1195 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || |||| ||||| ||||| ||||||||| Sbjct 1194 TCCAAAGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATT 1147 >seq21003 Length=4390 Score = 100 bits (110), Expect = 6e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60147 GAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCA 60206 |||| | |||||||| | || ||||| || || || || | || ||||||||||||| Sbjct 1251 GAGCTCTGTGGTGGTATTTCATCTCTAAGGGCATCGAGTATCTGGACACGGTGTTTTTCA 1192 Query 60207 TACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGT 60266 | || ||||||||||| || ||||||| ||| || || || || || || | || |||| Sbjct 1191 TCCTGAGGAAAAAGTTCAACCAGGTTACTTTCTTGCATGTCTACCACCACTGCACCATGT 1132 Query 60267 TTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | | ||| | ||||| || ||| | || ||||| || Sbjct 1131 TCACTCTGTGGTGGATCGGCATCAAGTGGGTGGCAGGAGGACA 1089 >seq175001 Length=17688 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || || |||||||| || |||||||| || || ||| | || || || || Sbjct 8051 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCA 7992 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || ||||||||||| || || |||||||| Sbjct 7991 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAAATCTGCAT 7948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979204265203534