Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq146289 105 8e-18 seq135289 96.9 4e-15 seq71836 96.9 4e-15 seq62555 96.9 4e-15 >seq146289 Length=11722 Score = 105 bits (116), Expect = 8e-18 Identities = 240/357 (67%), Gaps = 13/357 (4%) Strand=Plus/Minus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| || | || || ||| |||||| |||||| ||||| ||||||||| ||| | Sbjct 3225 GGCCAGCTCCTTGGGCGAGGTGAAGTCGTCCACGTGGATGAAGGCGTCTCCCTGGATAAA 3166 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || || || |||| || | | || || || | || || | || | ||| | Sbjct 3165 GTTCTCATAGTTCTGCCTGGGCGGGCCAAGAACCACTGGCACTGTCCCCAC----AGACA 3110 Query 177065 TCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGAT 177120 ||| || |||||||| || || |||||| |||| | |||||||||||||| || | Sbjct 3109 GCGGGTTGTACAGTTTTTCAGTGATGTAGTCCTTGTGGATGGAGTTCTCAAACGACAGGT 3050 Query 177121 AGAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTAC 177178 |||| || ||| | ||| || |||| | | || | || | || || || || | Sbjct 3049 AGAACTTGCAGCTGGCGATGGT--GGGGAAGTAATCTTGGTCAGAGATGTACTCCCCGAA 2992 Query 177179 TACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCT 177238 | | || || |||| | || |||||||| | ||| ||||||| || | Sbjct 2991 GGCTTGTCCATACGCATGCACCTCAATGTGTTTGTACAACTCATTGTAGTATTTCACCCG 2932 Query 177239 CACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGG 177295 ||||||||| | |||||||||||| || | |||||| | | |||| | ||||| || Sbjct 2931 CACGTGGTCCTGGTTCCAATTGCTCACAATCCAGCAGATCAGCTTG-TTTTTGCTGG 2876 >seq135289 Length=1586 Score = 96.9 bits (106), Expect = 4e-15 Identities = 248/373 (66%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 162627 GGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAG 162686 ||||||||| || | ||| || | |||||| || | ||| ||||| | || ||| Sbjct 950 GGCCTTCAGTACCCGAATCATTTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGT 891 Query 162687 ATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGAT 162745 || | | || |||||| || ||| | | | |||||| | | ||||||| || Sbjct 890 GTTGAGCAGGTACCTCCACTGGAC-CTGCGAGCTCAGCAGATCTTTCATGCAGTTCAAAT 832 Query 162746 CGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGA 162805 | ||||| || || ||| || ||||| || || || || || ||| |||| ||||| | Sbjct 831 CTGCCTGCACTCGGGACCATGAGGCGTATACCACACTTTCTAATCTACTGGCTACAAACA 772 Query 162806 CATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATC----GGGTCCGCT 162861 | || || || |||| || || ||| ||| || | | ||| ||| ||| Sbjct 771 CGTTAGGAAAGCAGGAAATAATTACCGCCACAGCCT-TGTGGAAATCTTTAGGG---GCT 716 Query 162862 TTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTC 162921 ||| || || || || ||||| | |||||||| | || | || | || | || | Sbjct 715 TTCTGGTCCACATGCACACAGTAGATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGC 656 Query 162922 TCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCC 162981 || |||||||||||||| | ||| | ||| || || || || |||||||| | | ||| Sbjct 655 TCAAACATCTCTATCTTCTCGTGGATCACCATGGAGTAGGCAATGGGGAAATTATTTTCC 596 Query 162982 TCGCGACTGAGAG 162994 || |||||||| Sbjct 595 TCCTCACTGAGAG 583 >seq71836 Length=1774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 248/373 (66%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 162627 GGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAG 162686 ||||||||| || | ||| || | |||||| || | ||| ||||| | || ||| Sbjct 1138 GGCCTTCAGTACCCGAATCATTTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGT 1079 Query 162687 ATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGAT 162745 || | | || |||||| || ||| | | | |||||| | | ||||||| || Sbjct 1078 GTTGAGCAGGTACCTCCACTGGAC-CTGCGAGCTCAGCAGATCTTTCATGCAGTTCAAAT 1020 Query 162746 CGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGA 162805 | ||||| || || ||| || ||||| || || || || || ||| |||| ||||| | Sbjct 1019 CTGCCTGCACTCGGGACCATGAGGCGTATACCACACTTTCTAATCTACTGGCTACAAACA 960 Query 162806 CATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATC----GGGTCCGCT 162861 | || || || |||| || || ||| ||| || | | ||| ||| ||| Sbjct 959 CGTTAGGAAAGCAGGAAATAATTACCGCCACAGCCT-TGTGGAAATCTTTAGGG---GCT 904 Query 162862 TTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTC 162921 ||| || || || || ||||| | |||||||| | || | || | || | || | Sbjct 903 TTCTGGTCCACATGCACACAGTAGATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGC 844 Query 162922 TCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCC 162981 || |||||||||||||| | ||| | ||| || || || || |||||||| | | ||| Sbjct 843 TCAAACATCTCTATCTTCTCGTGGATCACCATGGAGTAGGCAATGGGGAAATTATTTTCC 784 Query 162982 TCGCGACTGAGAG 162994 || |||||||| Sbjct 783 TCCTCACTGAGAG 771 >seq62555 Length=2559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 248/373 (66%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 162627 GGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAG 162686 ||||||||| || | ||| || | |||||| || | ||| ||||| | || ||| Sbjct 2057 GGCCTTCAGTACCCGAATCATTTCAACATTGGTTTTGATGGGGAAGTCTGACCCACAGGT 2116 Query 162687 ATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGAT 162745 || | | || |||||| || ||| | | | |||||| | | ||||||| || Sbjct 2117 GTTGAGCAGGTACCTCCACTGGAC-CTGCGAGCTCAGCAGATCTTTCATGCAGTTCAAAT 2175 Query 162746 CGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGA 162805 | ||||| || || ||| || ||||| || || || || || ||| |||| ||||| | Sbjct 2176 CTGCCTGCACTCGGGACCATGAGGCGTATACCACACTTTCTAATCTACTGGCTACAAACA 2235 Query 162806 CATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATC----GGGTCCGCT 162861 | || || || |||| || || ||| ||| || | | ||| ||| ||| Sbjct 2236 CGTTAGGAAAGCAGGAAATAATTACCGCCACAGCCT-TGTGGAAATCTTTAGGG---GCT 2291 Query 162862 TTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTC 162921 ||| || || || || ||||| | |||||||| | || | || | || | || | Sbjct 2292 TTCTGGTCCACATGCACACAGTAGATGTTCTGAGGAGTATAAACAGCTCGTAGAAGTCGC 2351 Query 162922 TCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCC 162981 || |||||||||||||| | ||| | ||| || || || || |||||||| | | ||| Sbjct 2352 TCAAACATCTCTATCTTCTCGTGGATCACCATGGAGTAGGCAATGGGGAAATTATTTTCC 2411 Query 162982 TCGCGACTGAGAG 162994 || |||||||| Sbjct 2412 TCCTCACTGAGAG 2424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576924418217600