Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq197795 105 5e-18 seq197728 100 2e-16 >seq197795 Length=4345 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||||||| || ||| |||||||||||| |||||| ||||||||| Sbjct 1647 CCAGACCACCTCCAGCTCTGCGTTCAGTCGGTCCAGCTTCACAAAGTCGTCCTTGTTGGT 1706 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | |||||| | ||||| |||||||||| |||||||| |||| ||||| | || Sbjct 1707 GATCGGACCTCCGGATTTCAGCCGCCAGCCGTTCAGCTTCCAGGTCTTCACCCAGCTGGT 1766 Query 77431 CACACC 77436 |||||| Sbjct 1767 CACACC 1772 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 |||||| ||||||||||| |||| ||||| |||||||||||| || ||| ||||| | Sbjct 3534 CTCTGAAGAACGCCCAGGCGTCTTTCTCTGATGCAAACTTCTTGAAAGAGGCGGCTGGAA 3593 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| || ||||||||||||||||||| Sbjct 3594 ATTTGTCCACCTGGCTCTTACATTCATCCC 3623 >seq197728 Length=3639 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| |||||| || ||| |||| || || || || ||||| |||| ||||| Sbjct 2494 CCTGCTCCCAATTTACTGAAGTCTCTCTTGGACTGGAAGGTGTAGACAGTCAGTCCAGCG 2435 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || | | ||| || | |||||||||||||||||||||| Sbjct 2434 AACACAGCACAGGTCAGGAACAAGGCTTGCAGCACAGTGGAGTATTCATAGAAGGTCA 2377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396445997978530