Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq206233 98.7 8e-16 seq155386 98.7 8e-16 seq58798 98.7 8e-16 >seq206233 Length=6715 Score = 98.7 bits (108), Expect = 8e-16 Identities = 262/397 (66%), Gaps = 5/397 (1%) Strand=Plus/Plus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || |||||||||||||| || ||||| | ||| || || | | |||| || Sbjct 5091 GGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCCTCATGAA 5150 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || || || | ||| | || || || || ||||| ||| | | ||| || | || | Sbjct 5151 CAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTCCCAGT 5210 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | ||||| || | || |||||||| |||| |||| || Sbjct 5211 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGC 5270 Query 131782 CATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || | | || ||||| || | |||| ||| || |||||||||| || Sbjct 5271 GAAGGCCCCGGGTCTCTTGTTCCCGCCCTGGTCGACATAACGGGCCGTGTTGTTGTAGAC 5330 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || ||||||| | | ||||||| ||| || ||||||| |||||||| || | Sbjct 5331 TCTCAGCATGGGCACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCTGT 5390 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGC 131957 | |||||| | ||| | || || ||||| |||| |||| ||||| || |||| Sbjct 5391 TGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCG-ATTTGGAGATGAGGGCGC 5449 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 ||| | | |||| || || ||||| | |||||| Sbjct 5450 ATTGCTTCAAGGTGTCGTAAATGCCTTCGATGCTGTC 5486 >seq155386 Length=3452 Score = 98.7 bits (108), Expect = 8e-16 Identities = 262/397 (66%), Gaps = 5/397 (1%) Strand=Plus/Plus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || |||||||||||||| || ||||| | ||| || || | | |||| || Sbjct 1671 GGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCCTCATGAA 1730 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || || || | ||| | || || || || ||||| ||| | | ||| || | || | Sbjct 1731 CAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTCCCAGT 1790 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | ||||| || | || |||||||| |||| |||| || Sbjct 1791 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGC 1850 Query 131782 CATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || | | || ||||| || | |||| ||| || |||||||||| || Sbjct 1851 GAAGGCCCCGGGTCTCTTGTTCCCGCCCTGGTCGACATAACGGGCCGTGTTGTTGTAGAC 1910 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || ||||||| | | ||||||| ||| || ||||||| |||||||| || | Sbjct 1911 TCTCAGCATGGGCACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCTGT 1970 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGC 131957 | |||||| | ||| | || || ||||| |||| |||| ||||| || |||| Sbjct 1971 TGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCG-ATTTGGAGATGAGGGCGC 2029 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 ||| | | |||| || || ||||| | |||||| Sbjct 2030 ATTGCTTCAAGGTGTCGTAAATGCCTTCGATGCTGTC 2066 >seq58798 Length=3922 Score = 98.7 bits (108), Expect = 8e-16 Identities = 262/397 (66%), Gaps = 5/397 (1%) Strand=Plus/Plus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || |||||||||||||| || ||||| | ||| || || | | |||| || Sbjct 2298 GGGGCACTCGCTGGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCCTCATGAA 2357 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || || || | ||| | || || || || ||||| ||| | | ||| || | || | Sbjct 2358 CAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTCCCAGT 2417 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | ||||| || | || |||||||| |||| |||| || Sbjct 2418 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGC 2477 Query 131782 CATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || | | || ||||| || | |||| ||| || |||||||||| || Sbjct 2478 GAAGGCCCCGGGTCTCTTGTTCCCGCCCTGGTCGACATAACGGGCCGTGTTGTTGTAGAC 2537 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || ||||||| | | ||||||| ||| || ||||||| |||||||| || | Sbjct 2538 TCTCAGCATGGGCACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCTGT 2597 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGC 131957 | |||||| | ||| | || || ||||| |||| |||| ||||| || |||| Sbjct 2598 TGATCTGATGCAGCTGACGGCCACACCGATTCCTCCAGCCG-ATTTGGAGATGAGGGCGC 2656 Query 131958 ATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 ||| | | |||| || || ||||| | |||||| Sbjct 2657 ATTGCTTCAAGGTGTCGTAAATGCCTTCGATGCTGTC 2693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423854570778672