Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq206233 172 7e-38 seq155386 172 7e-38 seq58798 172 7e-38 seq172677 95.1 2e-14 seq133256 95.1 2e-14 >seq206233 Length=6715 Score = 172 bits (190), Expect = 7e-38 Identities = 656/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 4194 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 4253 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | ||| || | ||||||||| | ||||| || || | Sbjct 4254 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 4313 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 4314 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 4373 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | || ||| ||||| || | | |||||| | || | Sbjct 4374 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 4433 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || || || |||||||||| |||| || | |||||| || | ||||| | Sbjct 4434 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CAGGAGAGC 4489 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 4490 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 4549 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 4550 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 4609 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 4610 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 4669 Query 111090 GTCGCATATTAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || |||| | ||| ||| | |||||||| || ||| | ||||||| Sbjct 4670 GACGCTTGTTTGACTTCTCCGCTTCAGGC---ACGGGATAGAAGTTTATTTCAATGATCT 4726 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAG 111203 ||| | || ||| || || |||| || | | | ||||||| | | ||||||| Sbjct 4727 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 4783 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 4784 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 4840 Query 111264 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCC 111323 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 4841 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 4900 Query 111324 CCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 111383 ||| |||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 4901 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 4960 Query 111384 CCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA-ATGGCG 111442 | | || ||||| || | || ||| || | || ||| | || | | || ||| Sbjct 4961 CAGATTCTGTCTGGGACTCGATAATGGCGTGCC--ACAGCTGCTGAGCCTTCACCACGCG 5018 Query 111443 TTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 111501 || | || | |||||| ||| | |||||||| ||||||||||| ||| | || Sbjct 5019 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 5077 Query 111502 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTC 111558 ||| || || || || | ||||| | || ||||| | | || ||| Sbjct 5078 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCA--GTCTTGGTTGCTCTC 5135 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 111601 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 5136 CACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 5180 >seq155386 Length=3452 Score = 172 bits (190), Expect = 7e-38 Identities = 656/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 774 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 833 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | ||| || | ||||||||| | ||||| || || | Sbjct 834 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 893 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 894 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 953 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | || ||| ||||| || | | |||||| | || | Sbjct 954 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 1013 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || || || |||||||||| |||| || | |||||| || | ||||| | Sbjct 1014 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CAGGAGAGC 1069 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 1070 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 1129 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 1130 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 1189 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 1190 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 1249 Query 111090 GTCGCATATTAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || |||| | ||| ||| | |||||||| || ||| | ||||||| Sbjct 1250 GACGCTTGTTTGACTTCTCCGCTTCAGGC---ACGGGATAGAAGTTTATTTCAATGATCT 1306 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAG 111203 ||| | || ||| || || |||| || | | | ||||||| | | ||||||| Sbjct 1307 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 1363 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 1364 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 1420 Query 111264 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCC 111323 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 1421 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 1480 Query 111324 CCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 111383 ||| |||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 1481 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 1540 Query 111384 CCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA-ATGGCG 111442 | | || ||||| || | || ||| || | || ||| | || | | || ||| Sbjct 1541 CAGATTCTGTCTGGGACTCGATAATGGCGTGCC--ACAGCTGCTGAGCCTTCACCACGCG 1598 Query 111443 TTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 111501 || | || | |||||| ||| | |||||||| ||||||||||| ||| | || Sbjct 1599 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 1657 Query 111502 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTC 111558 ||| || || || || | ||||| | || ||||| | | || ||| Sbjct 1658 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCA--GTCTTGGTTGCTCTC 1715 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 111601 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 1716 CACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 1760 >seq58798 Length=3922 Score = 172 bits (190), Expect = 7e-38 Identities = 656/1005 (65%), Gaps = 35/1005 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 1401 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGGTTGAC 1460 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | ||| || | ||||||||| | ||||| || || | Sbjct 1461 GATCTGGAACTCTCCGGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 1520 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 1521 GGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAG 1580 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | || ||| ||||| || | | |||||| | || | Sbjct 1581 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 1640 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || || || |||||||||| |||| || | |||||| || | ||||| | Sbjct 1641 GG-TGGGCGTCTTCT-CCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CAGGAGAGC 1696 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 1697 CTTCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 1756 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| || |||| | || ||||| ||||| | Sbjct 1757 CGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCTTCGGGGCTTTCAAACG 1816 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || | || || | |||||| ||||| | || || || |||| Sbjct 1817 GGTAACGCATGAGGATGAAGGCGTCGGCCAAACCTTGTACACCGATTCCTATCGGCCTGT 1876 Query 111090 GTCGCATATTAGACT--TTCGC-GCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || |||| | ||| ||| | |||||||| || ||| | ||||||| Sbjct 1877 GACGCTTGTTTGACTTCTCCGCTTCAGGC---ACGGGATAGAAGTTTATTTCAATGATCT 1933 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAG 111203 ||| | || ||| || || |||| || | | | ||||||| | | ||||||| Sbjct 1934 TGTTCAAGTTCTTG---ACGATGACTTTGGTCACGGCCTCTAGTTTTTTAAAGTCAAAAG 1990 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | | ||| |||| ||| | || ||||| || |||| |||||| || || Sbjct 1991 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTGCAGACCGCTA 2047 Query 111264 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCC 111323 ||| || | ||||| || | |||||||| || | |||| ||| || | Sbjct 2048 CCTCGTCGTGGCTCGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGGACTTGATGCAGC 2107 Query 111324 CCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 111383 ||| |||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 2108 CCAGGTTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTAC 2167 Query 111384 CCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACA-ATGGCG 111442 | | || ||||| || | || ||| || | || ||| | || | | || ||| Sbjct 2168 CAGATTCTGTCTGGGACTCGATAATGGCGTGCC--ACAGCTGCTGAGCCTTCACCACGCG 2225 Query 111443 TTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 111501 || | || | |||||| ||| | |||||||| ||||||||||| ||| | || Sbjct 2226 TTTGACCTTCCCCTCCTTCTCAAAGGAGGTGTAGAGCTTCTCAAACTCCTC-CCCCCAGC 2284 Query 111502 -GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTC 111558 ||| || || || || | ||||| | || ||||| | | || ||| Sbjct 2285 ACTCGTCCAGCCCGGGGCACTCGCTGGGACACATCAGGGACCA--GTCTTGGTTGCTCTC 2342 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 111601 |||| | ||||||| ||||| || |||||||||| || |||||| Sbjct 2343 CACCCTCCTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 2387 >seq172677 Length=14965 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || ||||||||||| ||| ||||| || | ||| || || || || Sbjct 3054 CTCATCTTTGCTTGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCC 2995 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| || || || Sbjct 2994 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 2935 Query 111385 CGTCTCCGTCTGTGA 111399 || || ||||| || Sbjct 2934 GGTTTCTGTCTGAGA 2920 >seq133256 Length=12775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || ||||||||||| ||| ||||| || | ||| || || || || Sbjct 9842 CTCATCTTTGCTTGTGTACTCTACAATCTCTGTGCACAGATTGCTGGATTTTATGGTGCC 9783 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| || || || Sbjct 9782 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTACC 9723 Query 111385 CGTCTCCGTCTGTGA 111399 || || ||||| || Sbjct 9722 GGTTTCTGTCTGAGA 9708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626395144497600