Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq206233 168 8e-37 seq155386 168 8e-37 seq58798 168 8e-37 seq195903 93.3 5e-14 seq172677 84.2 3e-11 seq133256 84.2 3e-11 >seq206233 Length=6715 Score = 168 bits (186), Expect = 8e-37 Identities = 533/814 (65%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||| || |||| || || || ||||||| || |||||||| ||||||| Sbjct 4996 TGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAG 4937 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 ||||||| ||| ||||| || || |||| |||| |||||| ||| |||| Sbjct 4936 ACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAACCTCT 4877 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | ||||||||| | |||| || | | || ||| || || || || || || || | Sbjct 4876 GCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATCTGGCCTCCA 4817 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACG 105125 |||| ||| || ||| || || ||| |||| ||||| | | ||||||| | | Sbjct 4816 TCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAAAACTAGAGG 4760 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 || || ||| || ||| ||| | |||| | ||||| | ||| || || |||| Sbjct 4759 CCGTGACCAAAGTCATCGTCAAGAACTTGAACAAGATCATTGAAATAAACTTCTATCCCG 4700 Query 105186 T---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 | ||| || || || || | | | ||| | || || || ||||||| || | Sbjct 4699 TGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAATCGGTGTACAAG 4643 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 || | || || | ||||| || || || | ||||| | |||||| || Sbjct 4642 GTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCGAAGCTCAGCTGC 4583 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGG 105362 | || | || ||||||||||| || ||||||| || |||||||| | ||| ||| Sbjct 4582 TGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGG 4523 Query 105363 CAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCT 105420 | | | || || || || || | || || ||||| | ||| |||||| | || Sbjct 4522 CCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCTG--TCAGCAAGGGCATCCT 4465 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCT-CTCAA 105477 || | || ||||||| || || || | | | || | |||| ||||||| || || Sbjct 4464 GCAGTACGACATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACT-GGAAGCTGCTGAA 4408 Query 105478 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGC 105537 ||| ||| || | || | | ||||| || || |||| || ||||| || || Sbjct 4407 GGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACCGC 4348 Query 105538 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||||||| ||| |||| || || || | | | || |||||||| | |||||||| Sbjct 4347 CTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTA 4288 Query 105598 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT 105657 | || ||| | |||||||| ||| |||||| ||||| | | ||||| Sbjct 4287 CACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTGCTCAAAGACCT 4228 Query 105658 CAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | |||| || || ||| | |||| |||||| Sbjct 4227 GACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 4194 >seq155386 Length=3452 Score = 168 bits (186), Expect = 8e-37 Identities = 533/814 (65%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||| || |||| || || || ||||||| || |||||||| ||||||| Sbjct 1576 TGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAG 1517 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 ||||||| ||| ||||| || || |||| |||| |||||| ||| |||| Sbjct 1516 ACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAACCTCT 1457 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | ||||||||| | |||| || | | || ||| || || || || || || || | Sbjct 1456 GCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATCTGGCCTCCA 1397 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACG 105125 |||| ||| || ||| || || ||| |||| ||||| | | ||||||| | | Sbjct 1396 TCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAAAACTAGAGG 1340 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 || || ||| || ||| ||| | |||| | ||||| | ||| || || |||| Sbjct 1339 CCGTGACCAAAGTCATCGTCAAGAACTTGAACAAGATCATTGAAATAAACTTCTATCCCG 1280 Query 105186 T---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 | ||| || || || || | | | ||| | || || || ||||||| || | Sbjct 1279 TGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAATCGGTGTACAAG 1223 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 || | || || | ||||| || || || | ||||| | |||||| || Sbjct 1222 GTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCGAAGCTCAGCTGC 1163 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGG 105362 | || | || ||||||||||| || ||||||| || |||||||| | ||| ||| Sbjct 1162 TGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGG 1103 Query 105363 CAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCT 105420 | | | || || || || || | || || ||||| | ||| |||||| | || Sbjct 1102 CCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCTG--TCAGCAAGGGCATCCT 1045 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCT-CTCAA 105477 || | || ||||||| || || || | | | || | |||| ||||||| || || Sbjct 1044 GCAGTACGACATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACT-GGAAGCTGCTGAA 988 Query 105478 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGC 105537 ||| ||| || | || | | ||||| || || |||| || ||||| || || Sbjct 987 GGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACCGC 928 Query 105538 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||||||| ||| |||| || || || | | | || |||||||| | |||||||| Sbjct 927 CTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTA 868 Query 105598 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT 105657 | || ||| | |||||||| ||| |||||| ||||| | | ||||| Sbjct 867 CACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTGCTCAAAGACCT 808 Query 105658 CAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | |||| || || ||| | |||| |||||| Sbjct 807 GACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 774 >seq58798 Length=3922 Score = 168 bits (186), Expect = 8e-37 Identities = 533/814 (65%), Gaps = 19/814 (2%) Strand=Plus/Minus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || ||| || |||| || || || ||||||| || |||||||| ||||||| Sbjct 2203 TGTGGCACGCCATTATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAG 2144 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 ||||||| ||| ||||| || || |||| |||| |||||| ||| |||| Sbjct 2143 ACGCCTGCAACAGGAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAACCTCT 2084 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAA 105065 | ||||||||| | |||| || | | || ||| || || || || || || || | Sbjct 2083 GCACAGAAATCGTTGAATACACGAGCCACGACGAGGTAGCGGTCTGCAATCTGGCCTCCA 2024 Query 105066 TCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACG 105125 |||| ||| || ||| || || ||| |||| ||||| | | ||||||| | | Sbjct 2023 TCGCGCTCAACATGTACGTCACCCCCGAG---CAGACTTTTGACTTTAAAAAACTAGAGG 1967 Query 105126 AAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCG 105185 || || ||| || ||| ||| | |||| | ||||| | ||| || || |||| Sbjct 1966 CCGTGACCAAAGTCATCGTCAAGAACTTGAACAAGATCATTGAAATAAACTTCTATCCCG 1907 Query 105186 T---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGG 105242 | ||| || || || || | | | ||| | || || || ||||||| || | Sbjct 1906 TGCCTGA---AGCGGAGAAGTCAAACAAGCGTCACAGGCCGATAGGAATCGGTGTACAAG 1850 Query 105243 GTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAA 105302 || | || || | ||||| || || || | ||||| | |||||| || Sbjct 1849 GTTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTTGAAAGCCCCGAAGCTCAGCTGC 1790 Query 105303 TCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGG 105362 | || | || ||||||||||| || ||||||| || |||||||| | ||| ||| Sbjct 1789 TGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGG 1730 Query 105363 CAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCT 105420 | | | || || || || || | || || ||||| | ||| |||||| | || Sbjct 1729 CCGCCGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCTG--TCAGCAAGGGCATCCT 1672 Query 105421 TCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCT-CTCAA 105477 || | || ||||||| || || || | | | || | |||| ||||||| || || Sbjct 1671 GCAGTACGACATGTGGG-AGAAGACGCCCACCGAC-CTGCTGGACT-GGAAGCTGCTGAA 1615 Query 105478 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGC 105537 ||| ||| || | || | | ||||| || || |||| || ||||| || || Sbjct 1614 GGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACCGC 1555 Query 105538 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||||||||| ||| |||| || || || | | | || |||||||| | |||||||| Sbjct 1554 CTCCACCGCACAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTA 1495 Query 105598 TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT 105657 | || ||| | |||||||| ||| |||||| ||||| | | ||||| Sbjct 1494 CACCCGCAGGGTGCTCTCCGGAGAGTTCCAGATCGTCAACCCCCATCTGCTCAAAGACCT 1435 Query 105658 CAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | |||| || || ||| | |||| |||||| Sbjct 1434 GACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 1401 >seq195903 Length=4854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || |||||| || ||||| |||||||||||||| || ||| ||| Sbjct 1484 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCTGGCTCATTCGCTGCT 1543 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || ||||||||||||||| |||| | ||||| || || || |||||||||||| || Sbjct 1544 ATCTATTGGCTCAAGAAGAGAGGATTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 1602 >seq172677 Length=14965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | || || | ||||||| || || || ||||||||||||||||| ||||| Sbjct 2899 GTGTGGCACGCCATCATTGAGTCTCAGACAGAAACCGGTACACCATACATGCTCTACAAG 2958 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||| ||| ||||| || || ||||| |||| || || |||||| Sbjct 2959 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATAAAATCCAGCAATCTG 3018 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| || | || | ||| |||||||||| Sbjct 3019 TGCACAGAGATTGTAGAGTACACAAGCAAAGATGAG 3054 >seq133256 Length=12775 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | || || | ||||||| || || || ||||||||||||||||| ||||| Sbjct 9687 GTGTGGCACGCCATCATTGAGTCTCAGACAGAAACCGGTACACCATACATGCTCTACAAG 9746 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||| ||| ||||| || || ||||| |||| || || |||||| Sbjct 9747 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATAAAATCCAGCAATCTG 9806 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| || | || | ||| |||||||||| Sbjct 9807 TGCACAGAGATTGTAGAGTACACAAGCAAAGATGAG 9842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581740632795440