Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq206233 176 5e-39 seq155386 176 5e-39 seq58798 176 5e-39 seq153500 91.5 2e-13 seq195903 84.2 2e-11 seq153030 82.4 8e-11 >seq206233 Length=6715 Score = 176 bits (194), Expect = 5e-39 Identities = 464/703 (66%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || ||||| || || || ||| || ||| || Sbjct 5576 AAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAATGCAGGGACCAATAGGCCACAGCTG 5517 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||| |||||| | || ||||| || ||| ||||| ||||| ||||| || | Sbjct 5516 TCCAGCTGTTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACCTTG 5457 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| | || |||| ||||||||| | | | || || |||||| | | | ||| | Sbjct 5456 AAGCAATGCGCCCTCATCTCCAAATCGGCTGGAGGAATCGGTGTGGCCGTCAGCTGCA-- 5399 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| || || |||||| | || | || ||||||| Sbjct 5398 -TCAGATCAACAGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTGCCC 5340 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | |||| ||||||||||||||| || ||| ||||||| || ||| | Sbjct 5339 ATGCTGAGAGTCTACAACAACACGGCCCGTTATGTCGACCAGGGCGGGAACAAGAGACCC 5280 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||| ||||| ||||| |||||| || | | || || || |||||| Sbjct 5279 GGGGCCTTCGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTG 5220 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || || |||||||| Sbjct 5219 AAGAAGAACACTGGGAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATC 5160 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | |||||||| || | || |||| ||||||||| || | | Sbjct 5159 CCCGACCTGTTCATGAGGAGGGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCCCAGC 5100 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||||||||| || | | ||| || || ||||||||| | || | || || | Sbjct 5099 GAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTA---CACCTC 5044 Query 53803 CGCAGTTCAGGGCCGCTA---CAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 | | ||| | | ||| ||| ||||| | || | ||| | || || Sbjct 5043 CTTTGAGAAGGAGGGGAAGGTCAAACGCGTGGTGAAGGCTCAGCAGCTGTGGCACGCCAT 4984 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 || || |||| || | || |||||||||||| ||||| || | |||| Sbjct 4983 TATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAG 4924 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||| || |||||| Sbjct 4923 GAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAAC 4881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 4374 CCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTC 4315 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 ||||||| ||||| | |||||||||| Sbjct 4314 CATCGAGCCCTACACCAGCAACATCTAC 4287 >seq155386 Length=3452 Score = 176 bits (194), Expect = 5e-39 Identities = 464/703 (66%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || ||||| || || || ||| || ||| || Sbjct 2156 AAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAATGCAGGGACCAATAGGCCACAGCTG 2097 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||| |||||| | || ||||| || ||| ||||| ||||| ||||| || | Sbjct 2096 TCCAGCTGTTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACCTTG 2037 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| | || |||| ||||||||| | | | || || |||||| | | | ||| | Sbjct 2036 AAGCAATGCGCCCTCATCTCCAAATCGGCTGGAGGAATCGGTGTGGCCGTCAGCTGCA-- 1979 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| || || |||||| | || | || ||||||| Sbjct 1978 -TCAGATCAACAGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTGCCC 1920 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | |||| ||||||||||||||| || ||| ||||||| || ||| | Sbjct 1919 ATGCTGAGAGTCTACAACAACACGGCCCGTTATGTCGACCAGGGCGGGAACAAGAGACCC 1860 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||| ||||| ||||| |||||| || | | || || || |||||| Sbjct 1859 GGGGCCTTCGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTG 1800 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || || |||||||| Sbjct 1799 AAGAAGAACACTGGGAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATC 1740 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | |||||||| || | || |||| ||||||||| || | | Sbjct 1739 CCCGACCTGTTCATGAGGAGGGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCCCAGC 1680 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||||||||| || | | ||| || || ||||||||| | || | || || | Sbjct 1679 GAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTA---CACCTC 1624 Query 53803 CGCAGTTCAGGGCCGCTA---CAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 | | ||| | | ||| ||| ||||| | || | ||| | || || Sbjct 1623 CTTTGAGAAGGAGGGGAAGGTCAAACGCGTGGTGAAGGCTCAGCAGCTGTGGCACGCCAT 1564 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 || || |||| || | || |||||||||||| ||||| || | |||| Sbjct 1563 TATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAG 1504 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||| || |||||| Sbjct 1503 GAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAAC 1461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 954 CCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTC 895 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 ||||||| ||||| | |||||||||| Sbjct 894 CATCGAGCCCTACACCAGCAACATCTAC 867 >seq58798 Length=3922 Score = 176 bits (194), Expect = 5e-39 Identities = 464/703 (66%), Gaps = 14/703 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || ||||| || || || ||| || ||| || Sbjct 2783 AAGTGGTTCACCCACGCCTCTCCTACGCTCTTCAATGCAGGGACCAATAGGCCACAGCTG 2724 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||| |||||| | || ||||| || ||| ||||| ||||| ||||| || | Sbjct 2723 TCCAGCTGTTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACCTTG 2664 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| | || |||| ||||||||| | | | || || |||||| | | | ||| | Sbjct 2663 AAGCAATGCGCCCTCATCTCCAAATCGGCTGGAGGAATCGGTGTGGCCGTCAGCTGCA-- 2606 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| || || |||||| | || | || ||||||| Sbjct 2605 -TCAGATCAACAGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTGCCC 2547 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | |||| ||||||||||||||| || ||| ||||||| || ||| | Sbjct 2546 ATGCTGAGAGTCTACAACAACACGGCCCGTTATGTCGACCAGGGCGGGAACAAGAGACCC 2487 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||| ||||| ||||| |||||| || | | || || || |||||| Sbjct 2486 GGGGCCTTCGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTG 2427 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || || |||||||| Sbjct 2426 AAGAAGAACACTGGGAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATC 2367 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | |||||||| || | || |||| ||||||||| || | | Sbjct 2366 CCCGACCTGTTCATGAGGAGGGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCCCAGC 2307 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||||||||| || | | ||| || || ||||||||| | || | || || | Sbjct 2306 GAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTA---CACCTC 2251 Query 53803 CGCAGTTCAGGGCCGCTA---CAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 | | ||| | | ||| ||| ||||| | || | ||| | || || Sbjct 2250 CTTTGAGAAGGAGGGGAAGGTCAAACGCGTGGTGAAGGCTCAGCAGCTGTGGCACGCCAT 2191 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 || || |||| || | || |||||||||||| ||||| || | |||| Sbjct 2190 TATCGAGTCCCAGACAGAATCTGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAG 2131 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||| || |||||| Sbjct 2130 GAAGAGCAACCACCAGAACCTGGGCTGCATCAAGTCCAGCAAC 2088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| ||||| || || || |||||| |||||||||||||| | Sbjct 1581 CCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCACAGATCCTGGGCAACAACGAGTC 1522 Query 55552 GTTCGAGCCGTACACGACCAACATCTAC 55579 ||||||| ||||| | |||||||||| Sbjct 1521 CATCGAGCCCTACACCAGCAACATCTAC 1494 >seq153500 Length=12299 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| || | || |||||||| || Sbjct 6730 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCGTTGATGCGAGTACCGAACTGA 6671 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 6670 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACT 6611 Query 117425 ATCGT 117429 || || Sbjct 6610 ATGGT 6606 >seq195903 Length=4854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| || || || | | |||||||||||| | ||| | |||||| Sbjct 1614 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAATCCTCTCTTCTTG 1555 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||| ||| ||| || ||| |||||||||||| || || |||||| || Sbjct 1554 AGCCAATAGATAGCAGCGAATGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCAAAAGCC 1495 Query 74892 ACAA 74895 |||| Sbjct 1494 ACAA 1491 >seq153030 Length=21569 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | ||||||||||| | || ||||||||||| Sbjct 15369 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGTAACCTGGTTCCAAACTGA 15310 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||||| |||| || ||||| | ||||||| ||||| || ||||| ||||| Sbjct 15309 CCCAGA-GGCTGCAGCAGGTTCAAGTTGTTGCTTCCCACAAAGTTCTGGGCCAA 15257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545789777258800