Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq147452 165 7e-36 seq199867 123 2e-23 seq56544 84.2 2e-11 >seq147452 Length=2500 Score = 165 bits (182), Expect = 7e-36 Identities = 141/174 (81%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 1961 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 1902 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| |||||||| || || | |||||| ||||||||||| ||||| ||||| | | Sbjct 1901 ACCCCGAGGCCCATGTCGCCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1842 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| ||||||||| || || |||||||||||| || |||| Sbjct 1841 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 1788 Score = 140 bits (154), Expect = 3e-28 Identities = 138/177 (78%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 734 CATGTTTGTGTACTCGGCGCCGAAGTGCCTCCACTGGAACCCGTACACGGGTCCCAGGTC 675 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||| || || || | ||| || ||||||| ||| | | || |||||||| || Sbjct 674 TCCTTCCTCTCTATCAGTGAACCCGAGGTTGTCCAGGAAGCCCCGCGACCCGTTGGCTTC 615 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399 ||| ||||| ||||| ||||| || ||||| |||| ||||| || || |||| ||| Sbjct 614 CCAAATCTTCACCCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC-CTGAGGAA 559 >seq199867 Length=9099 Score = 123 bits (136), Expect = 2e-23 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||||||||||||||| | ||| ||||||| |||||||||| ||||| || ||| Sbjct 9029 TTGAGCTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCCGGG 8970 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || || ||||| || ||||||||||| |||||||| |||||||||||| Sbjct 8969 ATAGAAAACCATGTTTTTCTACCCATGATCACCACATTCTGCTTGCCT 8922 >seq56544 Length=4272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||||| ||| | ||| |||| | | ||||| || ||||| ||| ||| Sbjct 3006 ACTCTGGCAGTAGACGGTATTTGTCTGGACTGATTTTAGGGAGGAATGTGTCACACTCAA 2947 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | || ||||| || || ||| | |||||| |||||||||| | |||| Sbjct 2946 ACTGCTTCAGGATTTGCGTGACGAAGAGTCTCCTGATCCCCTGGCTCTCCATCAACTCC 2888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405277897470552