Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq162191 107 1e-18 >seq162191 Length=1649 Score = 107 bits (118), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||| ||| |||||| || ||||| || || || || || || Sbjct 1593 AGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1534 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || ||||| || ||||| || | |||||| ||||| || || | |||||| Sbjct 1533 CCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCC 1474 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCT---CTCCACTTCCAC 34664 ||||| |||| || | || ||| | | || || || || |||||| |||| Sbjct 1473 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATG---CTATCACTAGGCTCCACCTCCAG 1418 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || |||||||| | || || ||||| ||||||||| Sbjct 1417 GGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCATG 1375 Score = 104 bits (114), Expect = 1e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||| ||| |||||| || ||||| || || || || || || Sbjct 1365 AGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 1306 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || || ||||| || | |||||| ||||| || || | |||||| Sbjct 1305 CCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCC 1246 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| | ||| | |||||| |||| || Sbjct 1245 TTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCACCTCCAAAGT 1187 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || ||||| | || |||||||| |||||||| |||| Sbjct 1186 GATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGA 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313929819565898