Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq162191 145 2e-29 seq175001 89.7 1e-12 seq206682 86.0 1e-11 >seq162191 Length=1649 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || |||||||| || |||||||| || || | || Sbjct 1600 TCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAG 1541 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||||||||| ||||| || ||||| || || || ||||| || || | Sbjct 1540 GGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGAT 1481 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| || ||| | ||| || ||||| Sbjct 1480 GCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGCTATCACTAGGCTCCACCTC 1421 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| ||||| | |||||| Sbjct 1420 CAGGGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCAT 1376 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || |||||||| || |||||||| || || | || Sbjct 1372 TCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAG 1313 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || || ||||| || || ||||| || || || ||||| || || | Sbjct 1312 GGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGGGAT 1253 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || || || |||| ||| | || ||||| Sbjct 1252 GCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCACCTC 1193 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| ||||| || || || ||||| ||||| | ||||||||| Sbjct 1192 CAAAGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 1145 >seq175001 Length=17688 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| || || |||||||| |||||| | |||||||| Sbjct 8051 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCA 7992 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 7991 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAAATCTGCATGTT 7945 >seq206682 Length=4510 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | ||| ||| ||| ||||| |||||| Sbjct 2554 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTTAGAATGGAGAAGAGACACAAC 2495 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTT--TTATCAAAGACAACAAGTGT 139938 || ||||||| || || |||| || | ||| | || | ||| |||| |||| | Sbjct 2494 TATGTGAGAAAGGTGGCCGAGACAGCGGTCCAGCTCTTCGTGTCCAACGACA--AAGT-T 2438 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| ||||| | || Sbjct 2437 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCTGACTTCAAGACCGAGCTCAGCCAGTCG 2378 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 2377 GACATGTTCGACCC 2364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156055344992690