Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq147452 156 3e-33 seq199867 114 1e-20 >seq147452 Length=2500 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | ||||||||||| || || ||| Sbjct 1961 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 1902 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| |||||||| ||||| | |||||| ||||| ||||| ||||| ||||| | | Sbjct 1901 ACCCCGAGGCCCATGTCGCCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1842 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||||| ||| ||||| || || || |||||||| Sbjct 1841 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGAGCCATGAG 1798 Score = 122 bits (134), Expect = 7e-23 Identities = 122/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| ||||||||||||||||||||||| |||||||||||||| || || || | || Sbjct 714 CGAAGTGCCTCCACTGGAACCCGTACACGGGTCCCAGGTCTCCTTCCTCTCTATCAGTGA 655 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 | || ||||||| ||| | | || |||||||| ||||| ||||| ||||| |||| Sbjct 654 ACCCGAGGTTGTCCAGGAAGCCCCGCGACCCGTTGGCTTCCCAAATCTTCACCCCTTTCT 595 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30171 | || ||||| |||| ||||| || || |||| ||| Sbjct 594 CTGACAGCTCCTTGGCATTTGTTGATCC-CTGAGGAA 559 >seq199867 Length=9099 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||||||||||||||| | ||| | ||||| |||||||||| ||||| || ||| Sbjct 9029 TTGAGCTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCCGGG 8970 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || || ||||| || ||||||||||| |||||||| |||||||| ||| Sbjct 8969 ATAGAAAACCATGTTTTTCTACCCATGATCACCACATTCTGCTTGCCT 8922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405131071530316