Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq147452 152 4e-32 seq40037 122 6e-23 >seq147452 Length=2500 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 1961 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 1902 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| |||||||| || || | |||||| ||||||||||| ||||| || || | Sbjct 1901 ACCCCGAGGCCCATGTCGCCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1842 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | ||||||||| || || |||||||||||| || |||| Sbjct 1841 ACGTAGAACTGACACAAGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 1788 Score = 136 bits (150), Expect = 3e-27 Identities = 137/177 (77%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||||||||| Sbjct 734 CATGTTTGTGTACTCGGCGCCGAAGTGCCTCCACTGGAACCCGTACACGGGTCCCAGGTC 675 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||| || || || | ||| || ||||||| ||| | | || |||||||| || Sbjct 674 TCCTTCCTCTCTATCAGTGAACCCGAGGTTGTCCAGGAAGCCCCGCGACCCGTTGGCTTC 615 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 27665 ||| ||||| ||||| ||||| || ||||| |||| ||||| || || |||| ||| Sbjct 614 CCAAATCTTCACCCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC-CTGAGGAA 559 >seq40037 Length=887 Score = 122 bits (134), Expect = 6e-23 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 69111 GTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTC 69170 |||| |||||||| | ||| | ||| ||| || ||| || |||| |||||| ||| Sbjct 658 GTGAGCATGCAGGTTGTGGGTAAGGTGGAGGGGACCTCATGCCCGTGTGGCCAGCTCGTC 599 Query 69171 CTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTG 69230 ||||||||||| ||||| ||||||| | ||| || ||||| ||||||||| ||||| Sbjct 598 CTGATGACCTGTGAGGANNNNNAGGTGTATGCCTACGATGGAGAGGAGCTGCATTTGGTG 539 Query 69231 GCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTAT 69290 ||| | ||| | ||| || ||||| ||||||| ||||| || | ||| ||| Sbjct 538 GCTTCAAGCCTGAAGCAGCTGATTGAAGAGGGAATAGAGTATCCATCAGACAAGACCTAC 479 Query 69291 TATCATGGGGAGGCCTTCAA 69310 || | |||||||| ||||| Sbjct 478 TACAAAGGGGAGGCATTCAA 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368568220543286