Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq34164 179 5e-40 seq120726 156 6e-33 seq126855 122 1e-22 >seq34164 Length=4105 Score = 179 bits (198), Expect = 5e-40 Identities = 206/277 (74%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| |||||| | || || || ||| | | ||| | |||| ||| |||| ||| Sbjct 3962 CCCTGGACGTTATTGCACACAAGCCTCTGCAGGGAGGCGGTGTTGATGATGTCGAAGCCC 3903 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||||||||||||| |||| |||| Sbjct 3902 ACGCTGCCTCCGAATGTGCTCGGCTTCCAGTACTCCGGGGAGCAGATGGCGTTTCCCATT 3843 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || ||||| ||||| Sbjct 3842 AAGCCCTTGAGGGAGTAAGGTGCCCCCATCTCCACCATGGTCTCGCCAAAGATTGCGTTA 3783 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548 | | |||||| |||||||| | || | ||| ||||||||||| || |||| |||||| Sbjct 3782 GACCTGGGCTTCTCCACCAACAGACCCGGGTAGAGCTCCACAGCGTCCACGTGTCCGTAG 3723 Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | || ||| | ||||| || || || ||||||| Sbjct 3722 AACTCCTCGAGCACTGCAGCCATTTCTTTCTCTCCTG 3686 Score = 123 bits (136), Expect = 4e-23 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||| ||| || || || | | |||| Sbjct 1902 ATGAGCCGGGTGGTCTGGAAGAGCCTTTCGTCATCCCAGTCCGGGTGGACCTCCTTCAAC 1843 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| ||||| | ||||||||| | |||||||| |||||||||||||| || || || Sbjct 1842 ACATCACACACTCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGACCGGGG 1783 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| || | ||||| Sbjct 1782 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGACTCGGGAACATGAGGAGGG 1723 Query 9424 TAGATCATGT--GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCA 9481 ||| ||||| || || || || || || | ||||||||||| || || || || | Sbjct 1722 TAGTGCATGTCAGCGCC--CACTTCCTTTACTGTTGGGGGATACATCTCTCCATCCATGA 1665 Query 9482 TCTG 9485 |||| Sbjct 1664 TCTG 1661 >seq120726 Length=4106 Score = 156 bits (172), Expect = 6e-33 Identities = 205/282 (73%), Gaps = 3/282 (1%) Strand=Plus/Plus Query 8272 CTCCTCAT--CG-GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||||| || ||||| |||| | | | ||||||| |||| |||| || || Sbjct 1797 CTCCTCATTTCGTGGAACATGGAAGTCCACGTAGGGACACCACTTGGTGTTGAGGCACAC 1856 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 || || | ||| | | | |||||||| ||| ||| ||||| || |||||||| Sbjct 1857 CAGTTTCTTCAGAGTGGAGGTTTTGACGATATTGAAACCCGTCTCTCCCCCAAAGGTGCT 1916 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||||| | |||||||||||| ||| |||| ||||||||||||||||| || Sbjct 1917 GGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCATCAGGCCTTTGAGGGAGAAGGG 1976 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| ||| | || |||||||| || | || ||||| | || |||| || Sbjct 1977 AGCACCCATCTCCACCATACTCTCACCAAATAGACTGTCAGGACGCGTTTTCTCCAGCAG 2036 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || |||| ||| ||||||| ||| || | ||| || ||||| Sbjct 2037 GACACCGGGGTAGAGCTCCAGAGCATCTATGTCACCATAAAG 2078 >seq126855 Length=17449 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| ||||||||||| || |||||||| ||| |||||| Sbjct 1011 TCACCAATGATGATGAGTCTGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGGATGT 1070 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| ||||| || ||||||||||| Sbjct 1071 TCTGACTTCAGGATGTCACAAACTCTGTTATGCTCCCTCAGCCATATGGTGGCGTACATG 1130 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | |||||||| |||| ||||||| |||||||| | | | || Sbjct 1131 GTGAGGCCCGGCAGGAGGCCAAACACCTCCTGACCGATGACCAGACGCTTCTCTGGAGGG 1190 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC 9446 | | |||||| | ||||||||| |||| || Sbjct 1191 AAGTTTTCAGGATACACCATGTGCACAGGGACCTC 1225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715008386074240