Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anoplopoma_20fimbria_20[genbank_20GCA_5F000499045.1_202013-11-25] 208,506 sequences; 699,326,415 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq162191 149 6e-31 >seq162191 Length=1649 Score = 149 bits (164), Expect = 6e-31 Identities = 174/233 (75%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 1603 GCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1544 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||| ||||| || || ||||| ||||| ||||| | ||| Sbjct 1543 GAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 1484 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACAGTG---TCGCTCGACT 41810 | || |||||||||| ||| || ||| |||| | || || || || | || Sbjct 1483 GATGCCCTCCTTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGCTATCACTAGGCT 1428 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||| || || || ||||| ||||| ||||| || || ||||||||| Sbjct 1427 CCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTGACAAAGATCTGCATG 1375 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 1375 GCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1316 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| ||||| ||||| || || || ||||| ||||| ||||| | ||| Sbjct 1315 GAGGGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCGGGGGG 1256 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| | | | | |||||| | |||||| Sbjct 1255 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCGCTGGGCTCCAC 1196 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || || || || || ||||| ||||| || || |||||||| || Sbjct 1195 CTCCAAAGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461099085527200