Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq54 89.7 4e-13 >seq54 Length=1125963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 18999 TGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGAT 19058 || ||||| || || | | |||||| | || |||||| |||||||| | ||||||||| Sbjct 982832 TGCCAGTTCTATGTCTCTGAGGGTGAACTGTCTTGCCAATTATACCAGCGCTCGGGGGAT 982891 Query 19059 ATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCG 19118 || || || || || || ||||| || || | ||||| ||||| || ||||| |||| Sbjct 982892 ATCGGTCTGGGTGTTCCATTCAATATCGCAAGCTATGCCCTTCTGACATACATGATAGCA 982951 Query 19119 CATGTTACAGGACTTAA 19135 || | |||||||| || Sbjct 982952 CACATCACAGGACTCAA 982968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399451731768075