Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 98.7 1e-15
>seq10607
Length=2140885
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482
|||| || ||||| || | |||||||||||||| || |||||||| ||||| || || |
Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294
Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542
|||| ||||| ||||| | | ||||| | ||| || || ||||| || | ||| |
Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354
Query 54543 ACATGTGCTGAGGTCTTTC 54561
||||||||| || |||||
Sbjct 832355 GCATGTGCTGTGGCCTTTC 832373
Score = 89.7 bits (98), Expect = 6e-13
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| ||||| ||||| ||||||||||||||||| ||||| ||| || ||||||| ||
Sbjct 831352 CTCCACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCT 831411
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || || || || ||||| || || || ||||| | | || ||| | |||||
Sbjct 831412 CTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCA 831471
Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176
|| || | ||| |||| | |||||||||
Sbjct 831472 TGGCTCAAGGTACATGGCAAATGCTCCAGGCC 831503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593641929982800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |