Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10607 98.7 1e-15 >seq10607 Length=2140885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 |||| || ||||| || | |||||||||||||| || |||||||| ||||| || || | Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 |||| ||||| ||||| | | ||||| | ||| || || ||||| || | ||| | Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354 Query 54543 ACATGTGCTGAGGTCTTTC 54561 ||||||||| || ||||| Sbjct 832355 GCATGTGCTGTGGCCTTTC 832373 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||||| ||||| ||||||||||||||||| ||||| ||| || ||||||| || Sbjct 831352 CTCCACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCT 831411 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || || || ||||| || || || ||||| | | || ||| | ||||| Sbjct 831412 CTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCA 831471 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176 || || | ||| |||| | ||||||||| Sbjct 831472 TGGCTCAAGGTACATGGCAAATGCTCCAGGCC 831503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641929982800