Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq10612 96.9 4e-15 >seq10612 Length=2433507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Minus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 ||||| | ||| | || |||||||| || ||||| | ||||| || | ||| || || Sbjct 588697 CCGTCTGGACCAATCAGAAACTTCTCAAAATTCCACGAGACGTCATTCCTGCAAACCGGG 588638 Query 83186 GACCAGGCAATGAGCTGGGGGTCGCTCA-CGAGCGTGCTCATG---TCGTCGCTAGGCGC 83241 |||| |||| || |||||| ||| | || || |||| | ||| || || Sbjct 588637 CTCCAGATGATGAACTTGGGGTCTGTCATCAAG---GC-CATGGAGTTGTCACTGGGGAA 588582 Query 83242 CGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCG 83299 ||||| | |||| | ||||| |||| || ||||| || | | ||| || || ||| Sbjct 588581 GGGCAG--CTTCTCCTTCAGGAACTCGAACAGGGGATGGGCATTGGTACCATTTACTTCG 588524 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 |||||| | ||| ||| ||||||||||||||||| |||||||||| ||||||| Sbjct 588523 ACCTTCTCCAGCAGCTGGAAGCGAGGCTCGAAGCCGTTCCCTGGACGGACGTACTTCAGG 588464 Query 83360 GAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 || | ||| || | |||| | | || ||||||| Sbjct 588463 CAATTGAGGATTTCTTCGTTCTTGCCATTCTCCTGGT 588427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/140 (76%), Gaps = 10/140 (7%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCC-----CGAGCTCC 83445 ||||||| ||||||||||| || || | || || | || |||||| |||| Sbjct 587007 CCTGGTGGCCGAACTGGTTGCAGGGCACTCCCAGGATCACGAGCCCCTTGTCCGAG---- 586952 Query 83446 TAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 ||| | || || |||||||||||||||||||| |||| |||||| | |||||||| || Sbjct 586951 TAGTTGGCG-TGGAGCTCGTTCATCTGAGTGTAGTCCCTGACCGTCGTGCCTCAGAGAGA 586893 Query 83506 CGCTACGTTCTCGATGAGCA 83525 |||||| ||||| || |||| Sbjct 586892 CGCTACATTCTCTATCAGCA 586873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608715107079400