Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq183 98.7 8e-16
seq10555 95.1 1e-14
>seq183
Length=784777
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||| | ||||||||| || || || || ||||| | || ||| | | ||
Sbjct 332101 AGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCT 332160
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || | ||||||||||| ||| | |||||| |||||
Sbjct 332161 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 332220
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||| || | | | || |||| ||||| || | ||| ||||||
Sbjct 332221 TGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTC 332280
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177
||||| || | || || ||||| ||||||||||
Sbjct 332281 TTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | |||||||||||| || ||||| ||||| | |||||| | | ||
Sbjct 331641 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 331700
Query 21024 TCCAGCTGTTTGCCCGC----ATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTT 21079
|||||||||||||| || || || | |||||||| || ||| | ||| || ||
Sbjct 331701 TCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTT 331760
Query 21080 GTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAAT 21139
||| |||||| ||| || | | | || || | ||||| || | ||| ||
Sbjct 331761 GTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 331820
Query 21140 GGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||||||| | || || || || || |||||
Sbjct 331821 GGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||||| ||||| || || || ||||| ||||| | |||||| | | ||
Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||||||||| ||| | || | |||||||| || ||| | |||||| |||||
Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||||| | | | || || | ||||| || | ||| ||||||
Sbjct 331993 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 332052
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || || || || |||||
Sbjct 332053 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084
>seq10555
Length=3328687
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| || | ||| | ||||||||||| || ||||| ||||| | ||
Sbjct 3315670 CCCCTC--AGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA 3315727
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
|||| | | || |||||||| || || || | || | | ||||||||| || |
Sbjct 3315728 GGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAA 3315787
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||||||||| || |||||| ||| || | | | || |||| |||||| ||
Sbjct 3315788 TGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTT 3315847
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| | || ||||||||||| || | ||| || || || || |||||
Sbjct 3315848 CGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 95.1 bits (104), Expect = 1e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||||||||| || ||||| ||||| | |||||| | |||| |||||||| || ||
Sbjct 3318447 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCA 3318506
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
|| | || || | ||||||||| || | || ||||| || |||||| |||
Sbjct 3318507 GCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3318566
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || || | |||||| |||| ||| |||||||| || || | |||
Sbjct 3318567 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTC 3318626
Query 21159 TTGACAAATATTTGCATTTT 21178
|| ||||| || ||||| ||
Sbjct 3318627 TTCACAAAGATCTGCATCTT 3318646
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
||| || || || || | || || | ||| | ||||||||||| || ||||| |||||
Sbjct 3315207 GTTGCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3315266
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
| |||||| | | || |||||||| || || ||| | || || | |||||||||
Sbjct 3315267 GGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGG 3315326
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
|| | || ||||| || ||| || ||||| | | | || |||| |||||
Sbjct 3315327 TGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTC 3315386
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| ||| | || |||||||| || || | ||| || || || || |||||
Sbjct 3315387 CACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422203954641260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |