Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10555 120 3e-22 seq183 109 5e-19 seq306 82.4 7e-11 >seq10555 Length=3328687 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||||| || || Sbjct 3318435 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 3318494 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| ||||||||||| ||||| || || |||||||| ||| Sbjct 3318495 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGG 3318554 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 3318555 ATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTA 3318614 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 3318615 CCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| || ||||| ||| || ||||| Sbjct 3315235 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGC 3315294 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||| ||||| || || |||||||| || ||||| Sbjct 3315295 TTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTA 3315354 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||| | |||||| | ||| || |||| || | || || || ||| Sbjct 3315355 GCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTC 3315414 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 3315415 AGCGTCTTCACGAAGATCTGCAT 3315437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| ||| || || |||||||| ||| | ||| || ||| || ||||| Sbjct 3315462 GTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTG 3315521 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| ||||||||||| || || || || |||||||| ||| || || Sbjct 3315522 CTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTT 3315581 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | ||||| || || ||||| | ||| | || || || || Sbjct 3315582 GGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGT 3315641 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 3315642 GAGGGTCTTGACAAAGATCTGCAT 3315665 >seq183 Length=784777 Score = 109 bits (120), Expect = 5e-19 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| || || |||||| ||| Sbjct 331640 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 331699 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACG----CTGCTGATCGGGAGGTATGCCCTCCT 118641 || |||||||| || || |||| | | ||||||||| || || |||||||| | Sbjct 331700 TTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTT 331759 Query 118642 TGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 ||||| || || ||| || | || | |||||| | ||| ||||| | ||| | Sbjct 331760 TGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGA 331819 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||||||||| || ||||| || ||||||||| || Sbjct 331820 TGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATGCCT 331860 >seq306 Length=458256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| |||||||||||||| || |||||| |||||| | |||||| |||||| | | Sbjct 295546 CTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCATCCTCCAACTGTTTGCCAGCGAAAA 295487 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | ||||||||||| ||||| || ||||| Sbjct 295486 TCAGACGCTGCTGGTCGGGGGGAATGCC 295459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433773640748620